View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_22 (Length: 237)
Name: NF2111_low_22
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48365667 - 48365447
Alignment:
| Q |
1 |
caaaacagtaaaaataaattcggctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagat |
100 |
Q |
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| T |
48365667 |
caaaacagtaaaaataaattcggctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagat |
48365568 |
T |
|
| Q |
101 |
gatggcttcaaatatattcttgcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365567 |
gatggcttcaaatatattcttgcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctcc |
48365468 |
T |
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| Q |
201 |
attagaagaagccacactact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
48365467 |
attagaagaagccacactact |
48365447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48396904 - 48397124
Alignment:
| Q |
1 |
caaaacagtaaaaataaattcggctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagat |
100 |
Q |
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||||||| |||| |||| ||||||||||||| |||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
48396904 |
caaaacaataaagttaaactcggctgctataaattacctcaacaccatctataaaacatcgatcgccaacatcaaatggatgcattacaaacacgaagat |
48397003 |
T |
|
| Q |
101 |
gatggcttcaaatatattcttgcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48397004 |
gatggcttcaaatatattcttgcacgtgtttccaaacatgaaagccgcaagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctcc |
48397103 |
T |
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| Q |
201 |
attagaagaagccacactact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
48397104 |
attagaagaagccacactact |
48397124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 48385178 - 48384990
Alignment:
| Q |
31 |
aagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtt |
130 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
48385178 |
aagttacctcaacaccatctataacacaccgatcgccaacatcgaacggatgcattacaaacacgaagatgatggcttcaaaaatattcttgcacgtgtt |
48385079 |
T |
|
| Q |
131 |
tccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacacta |
219 |
Q |
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| T |
48385078 |
tccaaacatgaaagccgcgagtactagctgcgatgagaggaatacaagtacttttgttgtcgcaatctccattagaagaagccacacta |
48384990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 51364944 - 51365008
Alignment:
| Q |
69 |
acatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtttcc |
133 |
Q |
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||||| ||||||||||||||||| | || ||||| |||||||||| | ||||||| |||||||| |
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| T |
51364944 |
acatcaaatggatgcattacaaataaaaatatgattgcttcaaatacagtcttgcatgtgtttcc |
51365008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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