View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_3 (Length: 453)
Name: NF2111_low_3
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 24 - 451
Target Start/End: Complemental strand, 46369277 - 46368853
Alignment:
| Q |
24 |
tttagttgaaaatattacacctaaaaattaaacttaaattcttctcaataaatcgccttattttgtttaaatagatgaaatgatgatagtaataaaactc |
123 |
Q |
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| T |
46369277 |
tttagttgaaaatattacacctaaaaattaaacttaaattcttctgaataaatcgccttattttgtttagatagatgaaatgat---agtaataaaactc |
46369181 |
T |
|
| Q |
124 |
agatacataaatagatgcgaaagatcccnnnnnnn-tgagcttgaacttttaaggaacgaactgagtttttacacaagaaagaatttaaactcatattta |
222 |
Q |
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| T |
46369180 |
agatacacaaatagatgcgaaagatcccaaaaaaaatgagcttgaacttttaaggaacgaactgagtttttacacaagaaagaatttaagctcatattta |
46369081 |
T |
|
| Q |
223 |
ttgtgagttaacagtctgattgttagtgaaaatgaattccagtaatttaaaatttcaccgtgatgcataatataaaatctagctgaaaataaatcgtctt |
322 |
Q |
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| T |
46369080 |
ttgtgagttaacagtctgattgttagagaaaatgaattccagtaatttaaaatttcaccgtgatgcataatataaaatctagctgaaaataaatcctctt |
46368981 |
T |
|
| Q |
323 |
annnnnnnaaagagaaataaaaattaaaaagacgatttattcataagatttttctgaataaatcgtctttaattacgtaactccacccaccaaatgtttg |
422 |
Q |
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| T |
46368980 |
atttctttaaagagaaataaaaataaaaaagacgatttattcataagatttttctg-ataaatcgtctttaattacgtaactccacccaccaaatgtttg |
46368882 |
T |
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| Q |
423 |
agttgtatgtaacggttcatctcactcga |
451 |
Q |
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| T |
46368881 |
agttgtatgtaacggttcatttcattcga |
46368853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 46369385 - 46369278
Alignment:
| Q |
193 |
tacacaagaaagaatttaaactcatatttattgtgagttaacagtctgattgttagtgaaaatgaattccagtaatttaaaatttcaccgtgatgcataa |
292 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||| |
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| T |
46369385 |
tacacaagaaagaatttaagctcatgtttattgtgagttaatggtctgattgttagagaaaatgaattccaataatttaaagtttcaccgtgatatatag |
46369286 |
T |
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| Q |
293 |
tataaaat |
300 |
Q |
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|||||||| |
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| T |
46369285 |
tataaaat |
46369278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 46368512 - 46368457
Alignment:
| Q |
390 |
tttaattacgtaactccacccaccaaatgtttgagttgtatgtaacggttcatctc |
445 |
Q |
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| T |
46368512 |
tttaatcacgtaactcaaccgatcaaatgcttgagttgtatgtaacggttcatctc |
46368457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 46369427 - 46369382
Alignment:
| Q |
82 |
tattttgtttaaatagatgaaatgatgatagtaataaaactcagataca |
130 |
Q |
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| T |
46369427 |
tattttgtttagatagatgaaatgat---agtaataaaactcagataca |
46369382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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