View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_7 (Length: 400)
Name: NF2111_low_7
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 47 - 347
Target Start/End: Original strand, 30246158 - 30246468
Alignment:
| Q |
47 |
ggatttagtgttaaagatcatgcgattatctcttatttg---ggtttagttgttgctggaagcttcaatcgtcatatcattcgaaatcgtatagtcatac |
143 |
Q |
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| T |
30246158 |
ggatttagtgttgaagatcatgcgattatctcttatttaattggtttagttgttgctggaagcttcaatcgtcatatcattcgaaatcgtatagtcatac |
30246257 |
T |
|
| Q |
144 |
caaattat----cactaacattcttctttacaaattaatatagaattagtcacattctcgcataactcaagtcacatacatggctacatataagttctta |
239 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30246258 |
cacattatttatcactaacattcttctttacaaattaatatagaattagtcacattctggcataactcaagtcacatacatggctacatataagttctta |
30246357 |
T |
|
| Q |
240 |
tgtaa---taccatatattgtaatcattaatcacaaaattcactnnnnnnntcacggaatgaccagttaaataaagaataatgctaaagtggcattgttt |
336 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30246358 |
tgtaatactactatatattgtaatcattaatcacaaaattcactaaaaaaatcacggaatgaccagttaaataaagaataatgctaaagtggcattgttt |
30246457 |
T |
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| Q |
337 |
ttatctataca |
347 |
Q |
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||||||||||| |
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| T |
30246458 |
ttatctataca |
30246468 |
T |
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