View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_8 (Length: 386)
Name: NF2111_low_8
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_8 |
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| [»] scaffold0024 (4 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 142415 - 142294
Alignment:
| Q |
18 |
atttcaccatttagacattcgtggagatattttatgaactcaaaattgacataacattatgacaaaactgtttgcatatgnnnnnnngttttacaatata |
117 |
Q |
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| T |
142415 |
atttcaccatttagacattcgtgcagatattttatgaactcaaaattgatataacattatgacaaaactgtttgcatatgaaaaaaagttttacaatata |
142316 |
T |
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| Q |
118 |
aatgcatagaaaataatctctt |
139 |
Q |
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| T |
142315 |
aatgcatagaaaataatctctt |
142294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 138490 - 138358
Alignment:
| Q |
218 |
tcaaatgtatttggtttaaatttaaatcaaatataattgactttttctta----taattaagaccagatgaataattaggtaagaaataaatgaaaactc |
313 |
Q |
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| T |
138490 |
tcaaatgtatttggtctaaatttgaatcaaatagaattgactttttcttaaaattaattaaggccagatgaataattaggtaagaagtaaatgaaaactc |
138391 |
T |
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| Q |
314 |
ttaaatggtcaaaacaataatatcctcaaatta |
346 |
Q |
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| T |
138390 |
ttaaatggtccaaataataatatccttaaatta |
138358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 138667 - 138546
Alignment:
| Q |
18 |
atttcaccatttagacattcgtggagatattttatgaactcaaaattgacataacattatgacaaaactgtttgcatatgnnnnnnngttttacaatata |
117 |
Q |
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| T |
138667 |
atttcaccatttagacattagtggagatattttatgagctcaaaattgacataaaattatgacttaactgattgcatataaaaaaaagttttacaatatt |
138568 |
T |
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| Q |
118 |
aatgcatagaaaataatctctt |
139 |
Q |
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| T |
138567 |
aacgcatagaaaataatctctt |
138546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 142218 - 142183
Alignment:
| Q |
215 |
gagtcaaatgtatttggtttaaatttaaatcaaata |
250 |
Q |
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| T |
142218 |
gagtcaaatgtatttggtttaaatttgaatcaaata |
142183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 32910631 - 32910678
Alignment:
| Q |
216 |
agtcaaatgtatttggtttaaatttaaatcaaatataattgacttttt |
263 |
Q |
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| T |
32910631 |
agtcaaatgtatttggtccaaatttaaatcaaatatatttgacttttt |
32910678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 26901541 - 26901479
Alignment:
| Q |
220 |
aaatgtatttggtttaaatttaaatcaaatataattgactttttct-tataattaagaccaga |
281 |
Q |
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| T |
26901541 |
aaatgtattttgttcaaatttaaatcaaatacatttgactttttgtatatatttaagaccaga |
26901479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 48508575 - 48508627
Alignment:
| Q |
216 |
agtcaaatgtatttggtttaaatttaaatcaaatataattgac-tttttctta |
267 |
Q |
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| T |
48508575 |
agtcaaatgtatttagtataaatttgaatcaaatatatttgacatttttctta |
48508627 |
T |
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