View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_1 (Length: 1830)
Name: NF21120_high_1
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 933; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 933; E-Value: 0
Query Start/End: Original strand, 430 - 1451
Target Start/End: Original strand, 44136242 - 44137263
Alignment:
| Q |
430 |
ttgatgaatcatgggacctcttaagaaatctcagcaccatgtccagtgatccctggtgcataattggcgacttcaatgacaacctatctccggaagataa |
529 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44136242 |
ttgacgaatcatgggacctcttaagaaatctcagcaccatgtccagcgatccctggtgcataattggcgacttcaatgaccacctatctccggaagataa |
44136341 |
T |
|
| Q |
530 |
acgaggtggcccttctcgtactgcctggctcattag--gattccaacaggtggtcaccgactgtaatttatatgatctacctcttcttggctaccaattc |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136342 |
acgaggtggcccttctcgtactgcctggctcattagaggattccaacaggtggtcaccgactgtaatttatatgatctacctcttcttggctaccaattc |
44136441 |
T |
|
| Q |
628 |
acttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctcttgttacttcctcctggcatgatctctacctgaatgcaactc |
727 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136442 |
acttggttcaaaagtatcggcaccgcttcttcgaaggaagcccgtttagatcgtgctcttgttacttcctcctggcatgatctctacctgaatgcaactc |
44136541 |
T |
|
| Q |
728 |
tgcaaactcttatggctccaatctctgatcatactcctcttttgcttcaattggaccctgttccctggcgcacaccacactactcctttcgtttcaacaa |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136542 |
tgcaaactcttatggctccaatctctgatcatactcctcttttgcttcaattggaccctgttccctggcgcacaccacactactcctttcgtttcaacaa |
44136641 |
T |
|
| Q |
828 |
ttcctggcttctggaaccggagctcatcaatctcattcaaaataattggggattctatacttcctctaatattattaccaaatttaactactgtgtggaa |
927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44136642 |
ttcctggcttctggaaccggagctcatcaatctcattcaaaataattggggattctatacttcctctaatattattaccaaattcaactactgtgtggaa |
44136741 |
T |
|
| Q |
928 |
gatatctcaacttggagccgagaagctgcaccaaattacagacatctaatccggaaacaatgcgnnnnnnntagaggagttccgcaatgctatgtgtgat |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
44136742 |
gatatctcaacttggagccgagaagctgcaccaaattacagacatctaatccggaaacaacgcgaaaaaaatagaagagttccgcaatgctatgtgtgat |
44136841 |
T |
|
| Q |
1028 |
ggtaacgacccgcaattggaaagtatgcagaaaaatctcgcttctctaattctacaagaggaaacttactggcgtcaacgttctaaggtctattggttag |
1127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44136842 |
ggtaacgacccgcaattggaaagtatgcagaaaaatctcgcttctttaattctacaagaggaaacttactggcatcaacgttctaaggtctattggttag |
44136941 |
T |
|
| Q |
1128 |
cagacggcgacactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattaagcaactgcgtgactcttcaggtaattggat |
1227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44136942 |
tagacg--gacactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattacgcaactgcgtgactcttcaggtaattggat |
44137039 |
T |
|
| Q |
1228 |
cacttcgcaagaggatctttgcgcccttgttcgtgattacttcacctccatattctcttcacaacatggagattatcatagcatcatttcctcggtccac |
1327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137040 |
cacttcgcaagaggatctttgcgcccttgttcgtgattacttcacctccatattctcttcacaacatggagattatcatagcatcatttcctcggtccac |
44137139 |
T |
|
| Q |
1328 |
tcaagggtaacagatgacgacaataccttgctcacccggcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccg |
1427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137140 |
tcaagggtaacagatgacgacaataccttgctcacccggcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccg |
44137239 |
T |
|
| Q |
1428 |
accctgatggacttaatccagctt |
1451 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44137240 |
accctgatggacttaatccagctt |
44137263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 44135820 - 44136152
Alignment:
| Q |
1 |
gaagaacaccctttccctgcacaagactaaaagcttatgagttatgaccaccccaagcaccaaaactgacttagactcaagttatgagcctgtagtcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44135820 |
gaagaacaccctttccctgcacaagactaaaagcttat-------gaccaccccaagcaccaaaactgacttagactcaagttatgagcctgtagtcctg |
44135912 |
T |
|
| Q |
101 |
tataacggcaccgaattacagcgccatagctaaatctagtcaaagacagcgcctcatccaaagacaatgacccaaaaaactccgtaggaccaaccccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44135913 |
tataacggcaccgaattacagcgccatagctaaatctagtcaaagacagcgcctcatccaaagacaatgacccaaaaaactccgtaggaccaaccccaat |
44136012 |
T |
|
| Q |
201 |
ccacccggaaaaacagcagccaaaaaacagcaaaccatatagcaccatgcgccacacttactccaaaaaaggccaacgacgacagcagcaccctaaacct |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44136013 |
ccaaccggaaaaacagcagccaaaaaacagcaaaccatatagcaccatgcgccacacttactccaaaaaaggccaaagacgacagcagcaccctaaacct |
44136112 |
T |
|
| Q |
301 |
tcaaaaaagaccacctgtcaaccgtcctaacacacttaga |
340 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
44136113 |
tcaaaaaagaccacctgtcaactgtccaaacacacttaga |
44136152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 281; E-Value: 1e-156
Query Start/End: Original strand, 1511 - 1812
Target Start/End: Original strand, 44137266 - 44137569
Alignment:
| Q |
1511 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagac--ccctgaaactatgaaggacctccgtccgatat |
1608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
44137266 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagacacccctgaaactatgaaggacctccgtcctatat |
44137365 |
T |
|
| Q |
1609 |
ccttatgcaatgtgctatacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttgt |
1708 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137366 |
ccttatgcaatgtgctctacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttgt |
44137465 |
T |
|
| Q |
1709 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
1808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137466 |
tcactctcgttctatcatggataacgctttaacaacatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
44137565 |
T |
|
| Q |
1809 |
ttag |
1812 |
Q |
| |
|
|||| |
|
|
| T |
44137566 |
ttag |
44137569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1713 - 1774
Target Start/End: Complemental strand, 13190706 - 13190645
Alignment:
| Q |
1713 |
tctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaa |
1774 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||||| ||||| |
|
|
| T |
13190706 |
tctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa |
13190645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 586 - 777
Target Start/End: Complemental strand, 12462297 - 12462106
Alignment:
| Q |
586 |
gactgtaatttatatgatctacctcttcttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctc |
685 |
Q |
| |
|
|||||||||||| |||| ||||| | |||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || | |
|
|
| T |
12462297 |
gactgtaatttacttgatatacctttgattggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagccc |
12462198 |
T |
|
| Q |
686 |
ttgttacttcctcctggcatgatctctacctgaatgcaactctgcaaactcttatggctccaatctctgatcatactcctcttttgcttcaa |
777 |
Q |
| |
|
|||| || ||||||||||| || || | ||||||||| |||||||| | | |||||||| || || || || ||||||||||||||| |
|
|
| T |
12462197 |
ttgtcacgtcctcctggcagacactttatccgaatgcaacgctgcaaacattggttgctccaatttcagaccacacgcctcttttgcttcaa |
12462106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1110 - 1227
Target Start/End: Complemental strand, 27646348 - 27646231
Alignment:
| Q |
1110 |
ctaaggtctattggttagcagacggcgacactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattaagcaactgcgtga |
1209 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || || || || |||||||| |||||||| ||||| || | || ||||| |
|
|
| T |
27646348 |
ctaaggtttattggttagctgatggcgatactaacagcaaatttttccacgcatcagcatctgccaggaagaggaaaaacactataaaaaagcttcgtga |
27646249 |
T |
|
| Q |
1210 |
ctcttcaggtaattggat |
1227 |
Q |
| |
|
| | ||||| |||||||| |
|
|
| T |
27646248 |
cccatcaggcaattggat |
27646231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1704 - 1808
Target Start/End: Original strand, 7272707 - 7272811
Alignment:
| Q |
1704 |
tttgttcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctt |
1803 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||| | ||||||||||||| ||| |||| ||||||||| || |||||| ||||||||||| ||| |
|
|
| T |
7272707 |
tttgttcgctcccgctctatcatggataacgctttaacgacgtttgagactctccgccacatgctttgcaaaagaaatggaaaatttggtgaagtttctt |
7272806 |
T |
|
| Q |
1804 |
tgaag |
1808 |
Q |
| |
|
||||| |
|
|
| T |
7272807 |
tgaag |
7272811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-19
Query Start/End: Original strand, 1582 - 1647
Target Start/End: Original strand, 14646195 - 14646260
Alignment:
| Q |
1582 |
aaactatgaaggacctccgtccgatatccttatgcaatgtgctatacaaagtaatctccaaggtac |
1647 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
14646195 |
aaactatgaaggacctccgtccgatatctttatgtaatgtgctctacaaagtcatctccaaggtac |
14646260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1577 - 1807
Target Start/End: Original strand, 16860799 - 16861029
Alignment:
| Q |
1577 |
ccctgaaactatgaaggacctccgtccgatatccttatgcaatgtgctatacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaac |
1676 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| | |||||| | |||||||| | ||||| ||||| || |||||||| || ||||| | |||| |
|
|
| T |
16860799 |
ccctgaaactataaaggatcttcgtcctatatcactgtgcaatatcttatacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagt |
16860898 |
T |
|
| Q |
1677 |
aaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaa |
1776 |
Q |
| |
|
|||||||| || ||||||| | || ||| ||||||||||||| |||| ||||||||| || || || || |||| | |||||||||||||| ||| |
|
|
| T |
16860899 |
aaatggatatctttagaacaggcggcttttattcactctcgttccatcacggataacgcattgactgctttcgagatcttgcaccatatgcgttgtaaat |
16860998 |
T |
|
| Q |
1777 |
ggaaaggaaaaattggtgaagttgctttgaa |
1807 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
|
|
| T |
16860999 |
caaaaggaaaaaaaggtgaggttgctttgaa |
16861029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 614 - 777
Target Start/End: Original strand, 16859835 - 16859998
Alignment:
| Q |
614 |
ttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctcttgttacttcctcctggcatgatctcta |
713 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || ||||| || ||||||||||| || || |
|
|
| T |
16859835 |
ttggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagcccttgtcacgtcctcctggcagacacttta |
16859934 |
T |
|
| Q |
714 |
cctgaatgcaactctgcaaactcttatggctccaatctctgatcatactcctcttttgcttcaa |
777 |
Q |
| |
|
| ||||||||| |||||||| | | |||||||| || || || || ||||||||||||||| |
|
|
| T |
16859935 |
tccgaatgcaacgctgcaaacattggttgctccaatttcagaccacacgcctcttttgcttcaa |
16859998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1662 - 1795
Target Start/End: Complemental strand, 54423839 - 54423706
Alignment:
| Q |
1662 |
cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacagcatttgagactctccacc |
1761 |
Q |
| |
|
||||| || |||||||||||||| || | ||||||| | |||||||| || ||||| || ||||||||||| || |||||||||| || ||| || | |
|
|
| T |
54423839 |
cgtccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc |
54423740 |
T |
|
| Q |
1762 |
atatgcgttgcaaaaggaaaggaaaaattggtga |
1795 |
Q |
| |
|
||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
54423739 |
atatgcgctgcaaaacaaaagaaaaaataggtga |
54423706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1394 - 1459
Target Start/End: Original strand, 29015626 - 29015691
Alignment:
| Q |
1394 |
acaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaa |
1459 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||| ||| ||||| |||||||| | ||||| |||| |
|
|
| T |
29015626 |
acaattttcagcatgcacctagataagtctcccggccccgatggccttaatcctggtttctatcaa |
29015691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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