View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_10 (Length: 631)
Name: NF21120_high_10
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 383 - 613
Target Start/End: Original strand, 45246880 - 45247110
Alignment:
| Q |
383 |
gatgtatcaaggcctaaatcattttttatctcattataggatggcaaaatcaaatgaaactgattatttgctcctgaataataaatccattgaaagtcca |
482 |
Q |
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| T |
45246880 |
gatgtatcaaggcctaaatcattttttatctcattataggatggcaaaatcaaatgaaactgattatttgctcctgaataataaatccattgaaagtcca |
45246979 |
T |
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| Q |
483 |
atagttgatggcttaaatggacgcataaatttccatgatgaagccatctgagactcttcnnnnnnnnnnnnngtacctttgtgaagtcctgtaccatcat |
582 |
Q |
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| T |
45246980 |
atagttgatggcttaaatggacgcataaatttccatgatgaagccatctgagactcttcttttttagtttttgtacctttgtgaagtcctgtaccatcat |
45247079 |
T |
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| Q |
583 |
ggcttctagtaggtccagatggttttacatt |
613 |
Q |
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| T |
45247080 |
ggcttctagtaggtccagatggttttacatt |
45247110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 45246679 - 45246818
Alignment:
| Q |
182 |
attttcttgctaaatggaagaacatttccaaggtcatgacgaattagtgctcccaaaaactgtacagcggtgaatttgatcctaagatatacaaatatat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45246679 |
attttcttgctaaatggaagaacatttccaaggtcatgacgaattagtgctcccaaaaactgtacagcagtgaatttgatcctaagatatacaaatatat |
45246778 |
T |
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| Q |
282 |
gaatccccgttgtagatgattatacaacaacaactttatg |
321 |
Q |
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| T |
45246779 |
gaatccccgttgtagatgattatacaacaacaactttatg |
45246818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 45246511 - 45246618
Alignment:
| Q |
14 |
agatttaatagaacgaagtgtaagcatgatcacatttaagacaataatacaaattttatgatttggttcaacagacaagacttgtgaaactgcataccaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45246511 |
agatttaatagaacgaagtgtaagcatgatcacatttaagacaataatacaaattttatgatttggttcaacagacaagacttgtgaaactgcataccaa |
45246610 |
T |
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| Q |
114 |
ggctttag |
121 |
Q |
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|||||||| |
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| T |
45246611 |
ggctttag |
45246618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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