View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_100 (Length: 232)
Name: NF21120_high_100
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 41621592 - 41621452
Alignment:
| Q |
15 |
acagaggaacaaacatgaatccactaacagaaaatgtttttgatatgatcatctttctttctccacttattgttacaatgagcatgaaaggtaaaacaat |
114 |
Q |
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| T |
41621592 |
acagaggaacaaacatgactccaataacaaaaaatatttttgatatgatcatctttatttctccacttattgttacaatgagcatgagaggtaaaacaat |
41621493 |
T |
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| Q |
115 |
tttttccttttcaacattcttggttacttcatacttaatat |
155 |
Q |
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| T |
41621492 |
tttttccttttcaacatttttcgttacttcgtacttaatat |
41621452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 41619259 - 41619226
Alignment:
| Q |
129 |
cattcttggttacttcatacttaatatattaaca |
162 |
Q |
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| T |
41619259 |
cattcttcgttacttcatacttaatatattaaca |
41619226 |
T |
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