View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_11 (Length: 621)
Name: NF21120_high_11
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 498 - 590
Target Start/End: Complemental strand, 14249011 - 14248919
Alignment:
| Q |
498 |
aaacccatttgtttctttattacatcttactgttattggtacttttcattttcctgctagtaggcatttcatattccatattgaatggctatt |
590 |
Q |
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| T |
14249011 |
aaacccatttgtttctttattacatcttactgttattggtacttttcattttcgtgctagtaggcatttcatattccagattgaatggttatt |
14248919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 16791940 - 16792033
Alignment:
| Q |
13 |
atgaacaaaatcaaattaagaaagaagaataggaaccaaatgtgaaatttgagatgagaaagnnnnnnnnngactgaaaactctgcaaaaaatt |
106 |
Q |
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| T |
16791940 |
atgagcaaaatcatattaagaaagaagaataggaaccaaatgtgaaatttgagatgagaaaggaaaaaaaagactgaaaactctgctaaaaatt |
16792033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 16792056 - 16792112
Alignment:
| Q |
114 |
agttcacttcgagtccagccgagtaaacctggtctggtttgtatttccaatttgctc |
170 |
Q |
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| T |
16792056 |
agttcacatcgaatccagccgagtcagcctggtctggtctgtatttccaagttgctc |
16792112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 16792117 - 16792149
Alignment:
| Q |
198 |
ttgaagttgttatctaaactggtggaatgcgat |
230 |
Q |
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| T |
16792117 |
ttgaagttgttatctaaactcgtggaatgcgat |
16792149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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