View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_12 (Length: 586)
Name: NF21120_high_12
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 570
Target Start/End: Complemental strand, 23046072 - 23045500
Alignment:
| Q |
7 |
ggagcagagagagaatagagtaggagctaattacaatgagaatgaga------tttttaactaccctatccctctttaacccgtcggattaacacatatt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
23046072 |
ggagcagagggagaatagagtaggagctaattacaatgagaatgagaatgagatttttaactaccctatccctctttaaccagttggattaacacatatt |
23045973 |
T |
|
| Q |
101 |
agtatacatttatgacacagacctcatgaaaacaagt---aaggctttcataggtgatagtgagtcaaacatttaggtgctctgtgatggaaactgattc |
197 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23045972 |
agtatacatttatgacacagatctcatgaaaacaagttgtaaggctttcataggtgatagtgagtcaaacatttaggtgctctgtgatggaaactgattc |
23045873 |
T |
|
| Q |
198 |
agaacatcaaaattgttgataggttttggcctccacccagtcctactcctaacaatctcggcaccatcatcgagtcgaagcaagtgcttgcattcaacaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23045872 |
agaacatcaaaattgttgataggttttggcctccacccagtcctacccctaacaatctcggcaccatcatcgagtcgaagcaagtgcttgcattcaacaa |
23045773 |
T |
|
| Q |
298 |
acccgctgtcagctaaatttccaatgtcagcaccagagacagatgtcagggactgaagtacactgttcctgccacattccctcctgtactccaaagtcat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23045772 |
acccgctgtcagctaaatttccaatgtcagcaccagagacagatgtcagggactgaagtacactgttcctgccacattccctcctgtactccaaagtcat |
23045673 |
T |
|
| Q |
398 |
ggaatgcagctcatgactctccaaaattggctgtggagcactctgcagcaatcaaacgacaatccttttggttaagcggcctgataagtttattgactaa |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23045672 |
ggaatgcagctcatgactctccaaaattggctgtggagcactctgcagcaatcaaacgacaatccttttggttaagcggcctgataagtttattgactaa |
23045573 |
T |
|
| Q |
498 |
acaaataatcaaaaagggattttaactcctctaaagtaaccaattcattctataagataaagttagcaatttc |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23045572 |
acaaataatcaaaaagggattttaactcctctaaagtaaccaattcattctataagataaagttagcaatttc |
23045500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 453
Target Start/End: Complemental strand, 46404554 - 46404286
Alignment:
| Q |
185 |
tggaaactgattcagaacatcaaaattgttgataggttttggcctccacccagtcctactcctaacaatctcggcaccatcatcgagtcgaagcaagtgc |
284 |
Q |
| |
|
||||| ||||||| || |||||| | ||| | |||||| ||||||||| ||| |||| ||| ||||| || || ||||| || ||||||||||| ||| |
|
|
| T |
46404554 |
tggaacctgattcgcaatatcaaagtggttcacaggtttgggcctccacttagttctacccctcacaatttcagccccatcttcaagtcgaagcaaatgc |
46404455 |
T |
|
| Q |
285 |
ttgcattcaacaaacccgctgtcagctaaatttccaatgtcagcaccagagacagatgtcagggactgaagtacactgttcctgccacattccctcctgt |
384 |
Q |
| |
|
| ||| |||| ||||| | ||||| ||| |||| ||||| || | ||||| || |||||||| || ||||||| | ||||||| |||||||| | |
|
|
| T |
46404454 |
tggcactcaatccggccgctttgagctagattaccaacaccagcatcatatacagaagttagggactggagcacactgtccttgccacactccctcctat |
46404355 |
T |
|
| Q |
385 |
actccaaagtcatggaatgcagctcatgactctccaaaattggctgtggagcactctgcagcaatcaaa |
453 |
Q |
| |
|
||||||||||||| | | ||||| |||||||| | |||| ||||||||||||||||| ||||||| |
|
|
| T |
46404354 |
actccaaagtcatagcacaaagctcgtgactctcgaggattgactgtggagcactctgcaaaaatcaaa |
46404286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University