View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_13 (Length: 586)
Name: NF21120_high_13
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 44135820 - 44135974
Alignment:
| Q |
1 |
gaagaacaccctttccctgcacaagactaaaagcttatgagttatgaccaccccaagcaccaaaactgacttagactcaagttatgagcctgtagtcctg |
100 |
Q |
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| T |
44135820 |
gaagaacaccctttccctgcacaagactaaaagcttat-------gaccaccccaagcaccaaaactgacttagactcaagttatgagcctgtagtcctg |
44135912 |
T |
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| Q |
101 |
tataacggcaccgaattacagcgccatagctaaatctagtcaaagacagcgcctcatccaaa |
162 |
Q |
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| T |
44135913 |
tataacggcaccgaattacagcgccatagctaaatctagtcaaagacagcgcctcatccaaa |
44135974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 44135688 - 44135504
Alignment:
| Q |
157 |
tccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaatggtgggtannnnnnnnnnnnnnnatatatatattgcttga |
256 |
Q |
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| T |
44135688 |
tccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaatggtgggtatgtgtgtgtgtgtatatatatatattgcttga |
44135589 |
T |
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| Q |
257 |
acattaaagnnnnnnnnggacataagtgatttaccgaaaaataaactatttagggacattttcttttgtaggactaaattatctc |
341 |
Q |
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| T |
44135588 |
acattaaagaaaaaaaaggacataagtgatttactgaaaaataaactatttagggacattttcttttgtaggactaaattatctc |
44135504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 339 - 439
Target Start/End: Complemental strand, 44134807 - 44134707
Alignment:
| Q |
339 |
ctcgaagccaaatgagatggttacatggagcctagaggttgtccgtatctgatacaggcacatctcgatgcttggagtatcctgcaagcttcaattcatc |
438 |
Q |
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| T |
44134807 |
ctcgaagccaaatgagatggttacatggagcctagaggttgtcggcatccgatacaggtacatctcgatgcttggagtatcctgcaagcttcaattcatc |
44134708 |
T |
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| Q |
439 |
t |
439 |
Q |
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| T |
44134707 |
t |
44134707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 568
Target Start/End: Complemental strand, 44134643 - 44134581
Alignment:
| Q |
503 |
tacatttttagttgcagtgaaaattagaatgtcgacattctcaaaaaatttgtgacagcacgtgct |
568 |
Q |
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| T |
44134643 |
tacatttttagttgcagtgaaaa---gaatgtcgacattctcaaaaaatttgtgacagcacgtgct |
44134581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 16456170 - 16456237
Alignment:
| Q |
274 |
ggacataagtgatttaccgaaaaataaactatttagggacattttcttttgtaggactaaattatctc |
341 |
Q |
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| T |
16456170 |
ggacataagtgatttattgaaaaataaactatttagggtcattttcttttgtacgactaaattatctc |
16456237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 16456061 - 16456119
Alignment:
| Q |
157 |
tccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaa |
215 |
Q |
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| T |
16456061 |
tccaaaatcctccatccaaacataccataaaatttatgtcacgtagttcatagttacaa |
16456119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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