View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_high_17 (Length: 547)

Name: NF21120_high_17
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_high_17
NF21120_high_17
[»] chr2 (6 HSPs)
chr2 (11-528)||(42205399-42205924)
chr2 (174-509)||(42212608-42212943)
chr2 (40-108)||(18570971-18571040)
chr2 (27-77)||(12464872-12464922)
chr2 (40-97)||(14268735-14268793)
chr2 (42-72)||(18029593-18029623)
[»] chr8 (4 HSPs)
chr8 (11-74)||(14227192-14227255)
chr8 (23-74)||(37225769-37225820)
chr8 (27-77)||(10170409-10170459)
chr8 (42-74)||(40063952-40063984)
[»] chr5 (3 HSPs)
chr5 (11-99)||(28296298-28296387)
chr5 (14-77)||(9878055-9878118)
chr5 (42-104)||(9055569-9055631)
[»] chr7 (1 HSPs)
chr7 (42-100)||(2525843-2525902)
[»] chr1 (4 HSPs)
chr1 (15-74)||(10475003-10475062)
chr1 (42-108)||(19637769-19637836)
chr1 (11-65)||(17831566-17831620)
chr1 (12-64)||(3490426-3490478)
[»] chr4 (2 HSPs)
chr4 (27-77)||(2796532-2796582)
chr4 (42-74)||(19195188-19195220)
[»] chr3 (4 HSPs)
chr3 (32-97)||(18268007-18268073)
chr3 (12-74)||(52067067-52067129)
chr3 (52-108)||(23271985-23272042)
chr3 (42-74)||(33548843-33548875)
[»] chr6 (1 HSPs)
chr6 (13-112)||(7377951-7378051)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Complemental strand, 42205924 - 42205399
Alignment:
Q  11 cacagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgatat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  42205924 cacagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaataatcatatgtgtcggtgccggacacgatat 42205825  T
Q  110 g-------caccgaacacgcctaatccaaggagtaaaggtgcttcatatagaataataattnnnnnnncagggaactaactgtgaagtataggataggtt 202  Q
    |       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  42205824 gtatctgacaccgaacacgcctaatccaaggagtaaaggtgcttcatatagaataataattaaaaaagcagggaactaactgtgaagtataggataggtt 42205725  T
Q  203 ggattaagatatcatatcacaactagaaaaaataatcaatcaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattcag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205724 ggattaagatatcatatcacaactagaaaaaataatcaatcaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattcag 42205625  T
Q  303 tgtgaaatggatatcatcgtgttacaaattcacctaattaaggttttattatctatttatttacacatatttctgattgatcacatatcatatcctatct 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42205624 tgtgaaatggatatcatcgtgttacaaattcacctaattaaggttttattatctatttattcacacatatttctgattgatcacatatcatatcctatct 42205525  T
Q  403 tatatgtgatactttttgtacttaaaacttggtaccaaataaaattcctcttaagatcttaggcaaaacaaaataattcacaaattgatgatcaattctc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205524 tatatgtgatactttttgtacttaaaacttggtaccaaataaaattcctcttaagatcttaggcaaaacaaaataattcacaaattgatgatcaattctc 42205425  T
Q  503 agtagatttgcgtaagatgagctcac 528  Q
    ||||||||||||||||||||||||||    
T  42205424 agtagatttgcgtaagatgagctcac 42205399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 174 - 509
Target Start/End: Complemental strand, 42212943 - 42212608
Alignment:
Q  174 ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc 272  Q
    ||||| |||||| |||||||||||| |||||||||||||| || | |   |   |||||| ||||||||| |||||||||||||||||||||||||||||    
T  42212943 ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc 42212846  T
Q  273 atcaaacaagcaaattacacatgaatt-cagtgtgaaatgga-------tatcatcgtgttacaaattcacctaattaaggttttattatctatttattt 364  Q
    ||||||||||||||||||||||||||| ||||||||||||||       || |||| |||||||||||||||||     | ||||| ||||||||||||     
T  42212845 atcaaacaagcaaattacacatgaattgcagtgtgaaatggataacaattaacatcatgttacaaattcaccta---tggtttttactatctatttattc 42212749  T
Q  365 acacatatttctgattgatcacatatcatatcctatcttatatgtgatactttttgtacttaaaacttggtacc---aaataaaattcctcttaagatct 461  Q
    ||||||||||   ||||||   || ||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||| ||||| || || |||      
T  42212748 acacatattt---attgat--tatgtcatatcctatcttatatgtgatgctttttgtacttaaaactaggtaccaataaatagaattcgtcgtatgattc 42212654  T
Q  462 taggcaaaacaaaataattcacaaattgatgatcaattctcagtagat 509  Q
    ||  |||||||||| |||||||||||||||||||||| ||||||||||    
T  42212653 ta-ccaaaacaaaa-aattcacaaattgatgatcaatactcagtagat 42212608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 18570971 - 18571040
Alignment:
Q  40 caacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgtcggacacgata 108  Q
    ||||||| ||||||||||||||||||||| ||||| ||  | |||||||||||| |||||| ||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaacacgata 18571040  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 12464922 - 12464872
Alignment:
Q  27 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 77  Q
    |||| ||||| ||| ||||||||||||||||||||||||||| | ||||||    
T  12464922 gacactgacacgccgacaccaataataatttgagaaaatgacatgattgaa 12464872  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 14268793 - 14268735
Alignment:
Q  40 caacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgt 97  Q
    |||||||  |||||||||||||||||||||||||||||  | || ||||||||||||||    
T  14268793 caacaccggtaataatttgagaaaatgacttaattgaacgtaatgatatgtgtcggtgt 14268735  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 18029623 - 18029593
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaa 72  Q
    |||||||||||||||||||||||||||||||    
T  18029623 acaccaataataatttgagaaaatgacttaa 18029593  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 14227192 - 14227255
Alignment:
Q  11 cacagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaatt 74  Q
    ||||||||| ||||||| || ||||| | |||||||||||||||||||||||||| || |||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaataacataatt 14227255  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 37225820 - 37225769
Alignment:
Q  23 acacgacattgacatgccaacaccaataataatttgagaaaatgacttaatt 74  Q
    ||||||||| |||||| | |||||||||||||||||||||||| || |||||    
T  37225820 acacgacatagacatgtctacaccaataataatttgagaaaataacataatt 37225769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 10170459 - 10170409
Alignment:
Q  27 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 77  Q
    ||||||| || | |||||||||||||||||||||||||| | |||||||||    
T  10170459 gacattggcacgtcaacaccaataataatttgagaaaataaattaattgaa 10170409  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 40063952 - 40063984
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaatt 74  Q
    ||||||||||||||||||||||||||| |||||    
T  40063952 acaccaataataatttgagaaaatgacataatt 40063984  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 28296298 - 28296387
Alignment:
Q  11 cacagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcg 99  Q
    |||||||||  |||||||||| |||| | | ||||| ||||||||||||||||||||| ||||| ||  || |||||||||| |||||||    
T  28296298 cacagacacaagacacgacatggacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcg 28296387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 9878118 - 9878055
Alignment:
Q  14 agacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 77  Q
    |||||||| ||| |||| ||||| | | ||||||||||||||||||||| |||| |||||||||    
T  9878118 agacaccgaacaagacactgacacgtcgacaccaataataatttgagaatatgaattaattgaa 9878055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 9055569 - 9055631
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaattgaaaatatcatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||| |||||| | |||| |||  |||||||||||||||||||| ||||    
T  9055569 acaccaatagtaatttgaaaaaatggcataatagaatgtatcatatgtgtcggtgtcgaacac 9055631  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 2525902 - 2525843
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgtcgg 100  Q
    ||||| ||||||||||||| ||||||| ||||| || || ||||||||||||||||||||    
T  2525902 acaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtcgg 2525843  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 10475062 - 10475003
Alignment:
Q  15 gacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaatt 74  Q
    |||||||||||||||||||||| ||| |||||  |||||| |||||||||| || |||||    
T  10475062 gacaccggacacgacattgacacgccgacaccgctaataacttgagaaaatcacataatt 10475003  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 19637769 - 19637836
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgata 108  Q
    ||||| |||||||||| |||||||||| | ||| ||  || |||||||||||||||||||||||||||    
T  19637769 acaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacacgata 19637836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 17831620 - 17831566
Alignment:
Q  11 cacagacaccggacacgacattgacatgccaacaccaataataatttgagaaaat 65  Q
    ||||||||||||| |||||| ||||| ||| |||||  |||||||||||||||||    
T  17831620 cacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaat 17831566  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3490478 - 3490426
Alignment:
Q  12 acagacaccggacacgacattgacatgccaacaccaataataatttgagaaaa 64  Q
    ||||||||||||||||||| ||||| ||| ||||   ||||||||||||||||    
T  3490478 acagacaccggacacgacactgacacgccgacactgctaataatttgagaaaa 3490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 2796532 - 2796582
Alignment:
Q  27 gacattgacatgccaacaccaataataatttgagaaaatgacttaattgaa 77  Q
    ||||||||||   |||||||| ||||||||||||||||||| |||||||||    
T  2796532 gacattgacacttcaacaccattaataatttgagaaaatgaattaattgaa 2796582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 19195220 - 19195188
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaatt 74  Q
    ||||||||||||||||||||||||||| |||||    
T  19195220 acaccaataataatttgagaaaatgacgtaatt 19195188  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 18268073 - 18268007
Alignment:
Q  32 tgacatgccaacaccaataataatttgagaaaatgacttaattgaaaat-atcatatgtgtcggtgt 97  Q
    ||||||| ||||||  |||||||||||||||||||| |||||||||  | |||| ||||||||||||    
T  18268073 tgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 52067067 - 52067129
Alignment:
Q  12 acagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaatt 74  Q
    ||||||||||||||| ||| ||||| | | | |||||||||||||| ||||||||| ||||||    
T  52067067 acagacaccggacacaacactgacacgtcgataccaataataatttaagaaaatgaattaatt 52067129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 23272042 - 23271985
Alignment:
Q  52 taatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgata 108  Q
    |||||||||||| |||| ||||||||  || |||||||||||||||| ||||||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgtcggtgttggacacgata 23271985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 33548843 - 33548875
Alignment:
Q  42 acaccaataataatttgagaaaatgacttaatt 74  Q
    ||||| |||||||||||||||||||||||||||    
T  33548843 acaccgataataatttgagaaaatgacttaatt 33548875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 7377951 - 7378051
Alignment:
Q  13 cagacaccggacacgacattgacatgccaacaccaataataatttgagaaaatgacttaattgaaaata-tcatatgtgtcggtgtcggacacgatatgc 111  Q
    |||||||||||||| |||  ||||  || |||||  ||| ||||||||||||| || ||||| ||  || | ||||||||||||||||||||||| ||||    
T  7377951 cagacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgc 7378050  T
Q  112 a 112  Q
    |    
T  7378051 a 7378051  T

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