View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_20 (Length: 532)
Name: NF21120_high_20
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 110 - 517
Target Start/End: Original strand, 13870096 - 13870501
Alignment:
| Q |
110 |
cctttgtaggagccaggcttttccaaacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
209 |
Q |
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| T |
13870096 |
cctttgtagaagccaggcttttccacacggacccaaacaccctttctttggtaccacacaattcctctctcggtatcaacaaattctccaagatcttgta |
13870195 |
T |
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| Q |
210 |
ggttgaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcctaattacctccaaaagacta |
309 |
Q |
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| T |
13870196 |
ggttgaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcccaattacctccaaaagacta |
13870295 |
T |
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| Q |
310 |
ttgcacaaaatggtttcccacacaaagagttttcttcgtcaaaccaaagaccaatagcctacttcccagttaagttaattgttgcattgaactgattccg |
409 |
Q |
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| T |
13870296 |
ttgcacaaaatggtttcccacac--agagttttcttcgtcaaaccaaagacaaatagcctacttcccagttaagttgattgttccattgaactgattccg |
13870393 |
T |
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| Q |
410 |
gccaggaagagcatccttaacggcgagagtgttgtcatccacggtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaac |
509 |
Q |
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| T |
13870394 |
gccaggaagagcatccttaacggtgagagtgttgtcatccacagtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaac |
13870493 |
T |
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| Q |
510 |
agagtcct |
517 |
Q |
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| T |
13870494 |
agagtcct |
13870501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 13869941 - 13870037
Alignment:
| Q |
18 |
aaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcagaaaacacaattcactgagtcatctaaaggc-aaactctcctcctt |
113 |
Q |
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| T |
13869941 |
aaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcagaaaacacaattcactgagtcatctaaaggcaaaactctcctcctt |
13870037 |
T |
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