View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_24 (Length: 507)
Name: NF21120_high_24
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 54889730 - 54890211
Alignment:
| Q |
10 |
aataaaatagtggtgatctttacaagatttaaaatttcaactttatgagaatagaaaataccgctgtctcgcaaaagaatgaatttctgtatctaaaatc |
109 |
Q |
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| T |
54889730 |
aataaaatagtagtgatctttacaagatttaaaatttcaactttatgagaacagaaaataccgctgtctcgcaaaagaatgaatttctgtatctaaaatc |
54889829 |
T |
|
| Q |
110 |
aagaaaattgtcaactgatgtgtgtgtatatgtacatatacaattagattacaatactatacaagcgaacaaataaagtgtcctcaaagaaatttgcaat |
209 |
Q |
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| T |
54889830 |
aagaaaattgtcaactgatgtgtgtgtatatgtacatatacaattagattacaatactatacaagcgaacaaataaagtgtcctcaaagaaatttgcaat |
54889929 |
T |
|
| Q |
210 |
aatttttacttattttaaatgcaaattagagcagcatagaataatagaaaatgagaaaacagtatttaggaaagttgaattcaacaacacttcaaaaaat |
309 |
Q |
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| T |
54889930 |
aatttttacttattttaaatgcaaattagagcagcatagaataatagaaaatgagaaaacagtatttaggaaagttgaattcaacaacacttcaaaaaat |
54890029 |
T |
|
| Q |
310 |
catattcattcataatttgtaccaaacagactagcaatgtcttttccaatcaaaacaacttaattatttgcaagaaactcatcctctatttttatttccg |
409 |
Q |
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| T |
54890030 |
catattcattcataatttgtaccaaacagactagcaatgtcttttccaatcaaaacaactgaattatttgcaagaaactcatcctctatttttatttccg |
54890129 |
T |
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| Q |
410 |
acttttgtcttaccatttttattgctagtaaagttctctatgtatttgttacaaagaccggaagtgtcaaaacacgagaaat |
491 |
Q |
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| T |
54890130 |
acttttgtcttaccatttttattgctagcaaagttctctatgtatttgttacaaagaccggaagtgtcaaaacacgagaaat |
54890211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 54906218 - 54906261
Alignment:
| Q |
81 |
caaaagaatgaatttctgtatctaaaatcaagaaaattgtcaac |
124 |
Q |
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| T |
54906218 |
caaaagaatgaatttatgtatttaaaatcaagaaaattgtcaac |
54906261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 54895308 - 54895365
Alignment:
| Q |
80 |
gcaaaagaatgaatttctgtatctaaaatcaagaaaattgtcaactgatgtgtgtgtata |
139 |
Q |
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| T |
54895308 |
gcaaaagaatgaatttttgtatctaaattcatgaaaactgt--actgatgtgtgtatata |
54895365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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