View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_29 (Length: 484)
Name: NF21120_high_29
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 28285258 - 28285738
Alignment:
| Q |
13 |
aatatatcaggacctctacctaaatcatttgcaaacctaaacaagacaaagcatttgtaaggttctttacgacaataatgta--gtttaagct----cag |
106 |
Q |
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| T |
28285258 |
aatatatcaggacctctacctaaatcatttgcaaacctaaacaagacaaagcatttgtaaggttctttacgacaataatgtatagtttaagcatgaccac |
28285357 |
T |
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| Q |
107 |
ttgtgctatttttagttgaactcttttatttctcaa--------------------aataagaaaataatgtttcacttttccctccaatggcgcagtca |
186 |
Q |
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| T |
28285358 |
ttgtgctatttttagttgaactcttttatttctcaacctttgtaatcatttatcaaaataagaaaataatgtttcacttttccctccaatggcgcagtca |
28285457 |
T |
|
| Q |
187 |
catgaacaataattcaattagcgggcaaatcccaccggaacttgcgcgattaccatcacttgttcacttgtaagttggatattggaagcagccggtaact |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28285458 |
catgaacaataattcaattagcgggcaaatcccaccggaacttgcgcgattaccatcacttgttcacttgtaagttggatattggaagcagccggtaact |
28285557 |
T |
|
| Q |
287 |
tatttttcttggttttgtttaatccttagttatcataattacatgtttgttaacaacatgtttctgtcgacctgcagccttcttgataacaacaatttat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28285558 |
tatttttcttggttttgtttaatccttagttatcataattacatgtttgttaacaacatgtttctgtcgacctgcagccttcttgataacaacaatttat |
28285657 |
T |
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| Q |
387 |
caggatatcttcctcctcagctatcacaactaccaaacttacttatactgtatgatttcttagtctctgagatgtgtgtgt |
467 |
Q |
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| T |
28285658 |
caggatatcttcctcctcagctatcacaactaccaaacttacttatactgtatgatttcttagtctctgagatgtgtgtgt |
28285738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 32195664 - 32195606
Alignment:
| Q |
333 |
ttgttaacaacatgtttctgtcgacctgcagccttcttgataacaacaatttatcagga |
391 |
Q |
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||||| |||| |||| ||| | ||||||||| |||||||| |||||||||||||||||| |
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| T |
32195664 |
ttgttgacaaaatgtatctcttgacctgcagtcttcttgacaacaacaatttatcagga |
32195606 |
T |
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