View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_32 (Length: 457)
Name: NF21120_high_32
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 266 - 452
Target Start/End: Original strand, 33356380 - 33356563
Alignment:
| Q |
266 |
atggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggttggagtgg |
365 |
Q |
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| T |
33356380 |
atggtttgtgaaa-ttttaaatataatttgatggttgaatg--aatcaatatattgtgtgtgttcaggtaagagttcatggccagagttggttggagtgg |
33356476 |
T |
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| Q |
366 |
aaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatctaatgtcccctttg |
452 |
Q |
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| T |
33356477 |
aaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatcttctgtcccctttg |
33356563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 196 - 439
Target Start/End: Original strand, 33381813 - 33382050
Alignment:
| Q |
196 |
tgatgatgaatgcaaaggtaaggttttataattaatatgtttacatgcatatatatgaataataaattaaatggtttgtgaaaattttaattataatttg |
295 |
Q |
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| T |
33381813 |
tgatgatgaatgcaaaggtaaggagttatat---atatgtttacatgcttatatatgaataataaattaaatggtttgtgaaa-ttttaattataatttg |
33381908 |
T |
|
| Q |
296 |
atggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggttggagtggaaggaaaggtagcagaagctacaattcaaa |
395 |
Q |
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| T |
33381909 |
atggtttaatg--aatcaatatattgtgtgtgctcaggtaagagttcatggccagaattggttggagttgaaggaaaggtagcagaagctacaattcaga |
33382006 |
T |
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| Q |
396 |
gagagaatccattggtggatgccatcattgtgccagaaggatct |
439 |
Q |
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| T |
33382007 |
gggagaatgcatcggtgaaagccatcatagtgttagaaggatct |
33382050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 189 - 439
Target Start/End: Original strand, 33400071 - 33400310
Alignment:
| Q |
189 |
tgtcttatgatgatgaatgcaaaggtaaggttttataattaatatgtttacatgcatatatatgaataa-taaattaaatggtttgtgaaaattttaatt |
287 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| |
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| T |
33400071 |
tgtcttatgatgatgaatgcaaaggtaaggtgttata-----tatgtttacatgcatatatataaataaataaattaaatggttagtgaaa-ttttaatt |
33400164 |
T |
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| Q |
288 |
ataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggttggagtggaaggaaaggtagcagaagctac |
387 |
Q |
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| T |
33400165 |
ataatttgatggttgaatt--aatcaatat----tgtgttctcaggtaagagctcatggccagaattggttggagtggaaggaaaggtagcagaagctac |
33400258 |
T |
|
| Q |
388 |
aattcaaagagagaatccattggtggatgccatcattgtgccagaaggatct |
439 |
Q |
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| T |
33400259 |
aattgagagggagaatccattggtgaatgccatcattgtgccagaaggatct |
33400310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 33399891 - 33400005
Alignment:
| Q |
13 |
aaggttgccaacccataggatttgtgtattnnnnnnn--cataaggtttccaccaaaaactactatatatacaccttacattgcaatgcattatatatca |
110 |
Q |
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| T |
33399891 |
aaggttgccaacccataagatttgtgtattaaaaaaaagcataaggtttccaccaaaaactactataaatacatcatacattgcaatgcattatatatca |
33399990 |
T |
|
| Q |
111 |
caaacacaagaattg |
125 |
Q |
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|||||| |||||||| |
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| T |
33399991 |
caaacaaaagaattg |
33400005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 33381665 - 33381730
Alignment:
| Q |
60 |
ccaccaaaaactactatatatacaccttacattgcaatgcattatatatcacaaacacaagaattg |
125 |
Q |
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| T |
33381665 |
ccaccaaaaactactatatatacaccttacattgcaatgcattatatatcaaaaacacaagaattg |
33381730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 33356201 - 33356266
Alignment:
| Q |
50 |
cataaggtttccaccaaaaactactatatatacaccttacattgcaatgcattatatatcacaaac |
115 |
Q |
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| T |
33356201 |
cataaggttgctaccaaaaactactataaatacactattcattgcaatgcattatatatcacaaac |
33356266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 258 - 439
Target Start/End: Complemental strand, 39307185 - 39307011
Alignment:
| Q |
258 |
taaattaaatggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggt |
357 |
Q |
| |
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||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
39307185 |
taaattaaacggtttgtgaaa-tattaattataatttgatggttgaatt--aatcaatat----tgtgttctcaggtaagaactcatggccagagttggt |
39307093 |
T |
|
| Q |
358 |
tggagtggaaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatct |
439 |
Q |
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| T |
39307092 |
tggagtggaaggaaaggtagcagaagctacaattcagagtgagaatccattggtgaatgccatcattgtgccagaaggatct |
39307011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 39307340 - 39307265
Alignment:
| Q |
50 |
cataaggtttccaccaaaaactactatatatacaccttacattgcaatgcattatatatcacaaacacaagaattg |
125 |
Q |
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||||||||| | |||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
39307340 |
cataaggttgctaccaaaaactactataaatacagtattcattgcaatgcattatatatcacaaatacaagaattg |
39307265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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