View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_33 (Length: 455)
Name: NF21120_high_33
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 26721710 - 26722138
Alignment:
| Q |
19 |
agttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttg |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
26721710 |
agttagattcacgacgacagaggatttcatagacgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttg |
26721809 |
T |
|
| Q |
119 |
aagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721810 |
aagagcatgttcccaaagtgattgggaaaaacaaactcactttttttt-----atctcattctcttcttacttttaatttcattttattctgtaataatg |
26721904 |
T |
|
| Q |
219 |
ataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttga |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721905 |
ataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttga |
26722004 |
T |
|
| Q |
319 |
gaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722005 |
gaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
26722104 |
T |
|
| Q |
419 |
cattccttctccaattaattttttcttctcactc |
452 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
26722105 |
cattccttctcaaattaattttttcttctcactc |
26722138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 45117199 - 45116784
Alignment:
| Q |
19 |
agttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttg |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| || |
|
|
| T |
45117199 |
agttagattcacgacgacagaggatttcatagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggctcatcactctcttttt |
45117100 |
T |
|
| Q |
119 |
aagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatg |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117099 |
aagagcatgctcccaaagtgattgggaacatcaaattcactttttttt-----atctcattctcttcttacttttaatttcattttattctgtaataatg |
45117005 |
T |
|
| Q |
219 |
ataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45117004 |
ataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgag------------ |
45116917 |
T |
|
| Q |
319 |
gaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45116916 |
-aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
45116818 |
T |
|
| Q |
419 |
cattccttctccaattaattttttcttctcactc |
452 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
45116817 |
cattccttctcaaattaattttttcttctcactc |
45116784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 2987178 - 2987594
Alignment:
| Q |
19 |
agttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttg |
118 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
2987178 |
agttagattcacgacgacagaggatttcgtagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttatcactctcttttt |
2987277 |
T |
|
| Q |
119 |
aagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987278 |
aagagcatgttcccaaagtgattgggaacatcaaattcacttttttttt----atctcattctcttcttacttttaatttcattttattctgtaataatg |
2987373 |
T |
|
| Q |
219 |
ataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttga |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2987374 |
ataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatg-------------atttga |
2987460 |
T |
|
| Q |
319 |
gaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
418 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987461 |
gaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcat |
2987560 |
T |
|
| Q |
419 |
cattccttctccaattaattttttcttctcactc |
452 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
2987561 |
cattccttctcaaattaattttttcttctcactc |
2987594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University