View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_38 (Length: 403)
Name: NF21120_high_38
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 53957919 - 53957534
Alignment:
| Q |
1 |
gtaatatttttcattcagtttcatggtgagagttacatgcaagcgttactagttatttcacttgaaattagtataacttatttaccatcatatatcatgt |
100 |
Q |
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| T |
53957919 |
gtaatatttttcactcagtttcatggtgagagttacatgcaagcgttactagttatttcacttgaaattagtataaattatttaccatcatatatcatgt |
53957820 |
T |
|
| Q |
101 |
agatgccatggaagcagatattaccactgaaaagtatgtcaataaagagatggtttaaggaagtaaagctgaagaagaaagaagaacaaagattgcaaag |
200 |
Q |
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| T |
53957819 |
agatgccatggaagcagatattaccactgaaaagtatgtcaataaagaaatggtttaaggaagtaaagctgaagaagaaagaagaacaaagattgcaaag |
53957720 |
T |
|
| Q |
201 |
agcagatgtgcatgcagcaatgtccattgcaggagttgcagcagcacttgctgcaattgcttctgaaaattcnnnnnnngagtcaaatgaagatagagag |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53957719 |
agcagaggtgcatgcagcaatgtccattgcaggagttgcagcagcacttgctgcaattgcttctgaaaattcaaaaaaagagtcaaatgaagatagagag |
53957620 |
T |
|
| Q |
301 |
aaagcaatagcctctgctgctgctttggtagctgctcagtgtgcaaaagtagctgaatcaatgggagctaagaaagaggatcttag |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957619 |
aaagcaatagcctctgctgctgctttggtagctgctcagtgtgcaaaagtagctgaatcaatgggagctaagaaagaggatcttag |
53957534 |
T |
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