View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_39 (Length: 403)
Name: NF21120_high_39
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 43016326 - 43016710
Alignment:
| Q |
7 |
gttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatgaatgccattacgtatgaactttgaagtaatcctat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016326 |
gttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatgaatgccattacgtatgaactttgaagtaatcctat |
43016425 |
T |
|
| Q |
107 |
gttgtaacttattgacttttcaatcaaaatgtcatgatcataatcatatattcaacacgtttagagaaataagtggaattaatatgtttattttttctct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016426 |
gttgtaacttattgacttttcaatcaaaatgtcatgatcataatcatatattcaacacgtttagagaaataagtggaattaatatgtttattttttctct |
43016525 |
T |
|
| Q |
207 |
tattttcgatgttgtatatagatgtaaaccgtattttcatgaaaacaaaagtaggaaaactaaactaaatatctcaacacactctgccacgcttcggcta |
306 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
43016526 |
tattttcgatgctgtatatagatgtaaaccgtattttcatgaaaacaaaagtaggcaaactaaactaaatatctccacacactctgtcacgcttgggcta |
43016625 |
T |
|
| Q |
307 |
aaata-----actannnnnnnaaaatcattattatagataatctgtttttgttatcttgaaacagccatatgtgtgccacatttt |
386 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016626 |
aaataacgttactatttttttaaaatcattattatagataatctgtttttgttatcttgaaacagccatatgtgtgccacatttt |
43016710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University