View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_43 (Length: 387)
Name: NF21120_high_43
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 224 - 372
Target Start/End: Complemental strand, 56165182 - 56165034
Alignment:
| Q |
224 |
atccacttcttacccttaaaattacaaacaaaacattagaatccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56165182 |
atccacttcttacccttaaaattacaaacaaaacattagaaaccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt |
56165083 |
T |
|
| Q |
324 |
catgccatatttagatgcaaaatctctaccctagaaagaaagtagagag |
372 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
56165082 |
catgccatatttagacgcaaaatctctaccctagaaagaaagtagagag |
56165034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 53984925 - 53985024
Alignment:
| Q |
133 |
taaattaaatcattaaattatcctaaacatatgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccacttc |
232 |
Q |
| |
|
||||||||||| | |||||||||| | ||||| | ||||||| ||||||||||||||| || |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
53984925 |
taaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc |
53985024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 53971218 - 53971315
Alignment:
| Q |
133 |
taaattaaatcattaaattatcctaaacata-tgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccac |
229 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | ||||||||| ||||||||||||||| || || ||| | |||| ||||| ||||||||||| |
|
|
| T |
53971218 |
taaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatgttagagcacgtctagcatccac |
53971315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University