View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_44 (Length: 386)
Name: NF21120_high_44
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 31505631 - 31505303
Alignment:
| Q |
17 |
taatacaaactatcttgtaaaaaagtcagaataaaatcattgaatcagctttgtctgcataaagagatatttgaggttataaatattattgtcatagttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505631 |
taatacaaactatcttgtaaaaaagtcagaataaaatcattgaatcagctttgtctgcataaagagatatttgaggttataaatattattgtcatagttg |
31505532 |
T |
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| Q |
117 |
ttacaaacaaaggaataaaactttccgactgtaaatccatgatacagcagttaacaataactttgaagaaccatatccgtacatatgtacctacttttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505531 |
ttacaaacaaaggaataaaactttccgactgtaaatccatgatacagcagttaacaataactttgaagaaccatatccgtacatatgtacctacttttcc |
31505432 |
T |
|
| Q |
217 |
taacacaaccaaatagtccagtggcaaattggcttttaaggaacaactgaacatgttgatatggattgacaaccacaattaacaaataaaaaggagtgga |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505431 |
taacacaaccaaatagtccagtggcaaattggcctttaaggaacaactgaacatgttgatatggattgacaaccacaattaacaaataaaaaggagtgga |
31505332 |
T |
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| Q |
317 |
cctaatattagcactgcttatcatatata |
345 |
Q |
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| T |
31505331 |
cctaatattagcactgcttatcatatata |
31505303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 34497092 - 34497149
Alignment:
| Q |
282 |
ttgacaaccacaattaacaaataaaaaggagtggacctaatattagcactgcttatca |
339 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
34497092 |
ttgaaaaccacaattaacaaataaaaagaagtggacctaatgttagcactgcttatca |
34497149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 27608640 - 27608680
Alignment:
| Q |
282 |
ttgacaaccacaattaacaaataaaaaggagtggacctaat |
322 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
27608640 |
ttgaaaaccacaattaacaaataaaaaggagtggacctaat |
27608680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 21898945 - 21898886
Alignment:
| Q |
103 |
tattgtcatagttgttacaaacaaaggaataaaactttccgactgtaaatccatgataca |
162 |
Q |
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||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||| |
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| T |
21898945 |
tattgtcatagttgttacaaagaaaggaataatacttaataactgcaaatccatgataca |
21898886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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