View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_49 (Length: 359)
Name: NF21120_high_49
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 44858398 - 44858567
Alignment:
| Q |
7 |
tccaagaatatccccaaatctcttcgttctctcaaaacccaaacaccatggacaccgatggattatccctaatctgcagcggtctcggcgccattgaaga |
106 |
Q |
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| T |
44858398 |
tccaaaaaaatccccaaatctcttcgttctctcaaaacccaaacaccatggacaccgatggattatccctaatctgcagcggtctcggcgccattgaaga |
44858497 |
T |
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| Q |
107 |
agatgatgaaggcaaacgaatcggttattccaagggtgaatactgtctcggtatgaatgaatttgtttca |
176 |
Q |
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| T |
44858498 |
agatgatgaaggcaaacgaatcggttattccaagggtgaatactgtctcggtatgaatgaatttgtttca |
44858567 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 44858684 - 44858734
Alignment:
| Q |
293 |
agacgtgatgatccgcaatcccgcgatgtgttcaagcaagtgtgtaaatgg |
343 |
Q |
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| T |
44858684 |
agacgtgatgatccgcaatcccgcgatgtgttcaagctagtgtgtaaatgg |
44858734 |
T |
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