View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_high_5 (Length: 764)
Name: NF21120_high_5
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_5 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold0377 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 586; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 9 - 749
Target Start/End: Original strand, 40626941 - 40627677
Alignment:
| Q |
9 |
gagatgaatatattgcaaggttgttaannnnnnnatcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttat |
108 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
40626941 |
gagatgaatatgttgcagggttgttaatttttttatcatgtcaagaacaagtgagcatcaaacacatgatataataaaataagaatatcctccttcttat |
40627040 |
T |
|
| Q |
109 |
catgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcc |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||| |
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|
| T |
40627041 |
catgtgtgtaccaaacacatgaaatgataagtgtctatcttgttactatcatattatatccttatccaacttctaatcctatgatgtctctatcatatcc |
40627140 |
T |
|
| Q |
209 |
tgcgcaccaaacggactgtaaatggattggagaggaggttgaagctaataaatgggtttgcatagctgccaactagtagttttacattggtccgtactaa |
308 |
Q |
| |
|
| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
40627141 |
tacgcaccaaacgggccataaatgaattggagaggaggttgaagctaataaatgggtttgcatagttgccaactactagttttacattggtccgtactaa |
40627240 |
T |
|
| Q |
309 |
ttaatgtccggtaattatgtattaatttccaaaattacctccttttagaatatctataaaatgaaatgcaattttaacgtaaaaaatatgcaattaaacg |
408 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627241 |
t----gtccggtaattatgtattaatttctaaaattacctctttttagaatatctataaaatgaaatgcaattttaacgtaaaaaatatgcaattaaacg |
40627336 |
T |
|
| Q |
409 |
attgttgaagtcataaatatgcaattaaacaagtatttttaaaacactccttaagcatctaaaatagtaaatttttaaaaatgtattcaatatattaaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627337 |
attgttgaagtcataaatatgcaattaaacaagtatttttaaaacactccttaagcatctaaaatagtaaatttttaaaaatgtattcaatatattaaaa |
40627436 |
T |
|
| Q |
509 |
gttgaattatttaacnnnnnnngaataaatgacttgtttatttataaacctgaaaaatggcttaaaagcactcgtttacaagacttttacttaaaaatac |
608 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627437 |
gttgaattatttaactttttttgaataaatgacttgtttatttataaacttgaaaaatggcttaaaagcactcgtttacaagacttttacttaaaaatac |
40627536 |
T |
|
| Q |
609 |
aagtagaatctaatgttaaatgggtgattgagggtgtgtctatacaacacacgcaagcttaatttcaccttaagcttattcttattgattagccattaca |
708 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627537 |
aagtaaaatctaatgttaaatgggtgattgagggtgtgtctatacaacacacgcaagcttaatttcaccttaagcttattcttattgattagccattaca |
40627636 |
T |
|
| Q |
709 |
tgttcattatacttgagtaatttttaagccatagaccatgt |
749 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627637 |
tgttcattatacttgagtaatttttaagccatagaccatgt |
40627677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 12027329 - 12027484
Alignment:
| Q |
66 |
tcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcat |
165 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||| || || ||||||||||||| | |||||||||| ||||||| | | ||| ||| ||||||||||||| |
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|
| T |
12027329 |
tcaaacacgtgataggataaaataatgatatcctcttttttatcatgtgtgcccaaaacacatgacatgataaatgt-tattatatcactatcatatcat |
12027427 |
T |
|
| Q |
166 |
atccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgg |
222 |
Q |
| |
|
||||||||||||||||| ||| |||| | ||||||||||||| || ||| ||||||| |
|
|
| T |
12027428 |
atccttatccagcttcttatcatatcttatctctattatatcatgtgcatcaaacgg |
12027484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 6458336 - 6458406
Alignment:
| Q |
155 |
tatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggact |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| | ||| ||||| || |||||||||||||| |
|
|
| T |
6458336 |
tatcatatcatatccttatccatcttcttatcctatcatgtgtttataatatcatgtgcaccaaacggact |
6458406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 40053893 - 40053775
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||| ||||||||||||||||||| ||| | ||||| | | |||| | || |||||||||||||||||||||||| |||| ||| |||| | ||||||| |
|
|
| T |
40053893 |
ttctaatcatgtgtgcaccaaacatgtgataggataattgt-tatcttgttgctatcatatcatatccttatccagtttcttatcatatcttatctctat |
40053795 |
T |
|
| Q |
202 |
tatatcctgcgcaccaaacg |
221 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
40053794 |
cctatcatccgcaccaaacg |
40053775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 1529420 - 1529355
Alignment:
| Q |
153 |
actatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaa |
218 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||| ||||||| ||||| || ||||||| |
|
|
| T |
1529420 |
actatcatatcatatctttatccattttctaatcttatcatatctctatcatatcatgtgcaccaa |
1529355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 29127450 - 29127570
Alignment:
| Q |
105 |
ttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattat |
204 |
Q |
| |
|
|||||| ||||||||||||| ||||| | ||||| | | |||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||| || |
|
|
| T |
29127450 |
ttatcaagtgtgcaccaaacgcatgacaagataaatgtttatcctatcactatcatatcatatccttatccagtttcttatcctatcatgtttctatcat |
29127549 |
T |
|
| Q |
205 |
atcctgcgcaccaaacggact |
225 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
29127550 |
atcatgcgcaccaaacggact |
29127570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 43 - 201
Target Start/End: Original strand, 37970425 - 37970583
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtat |
142 |
Q |
| |
|
|||||||| | | |||||| ||| ||||| ||||||| |||||||||| ||||||| || |||||| |||||||||||| ||||| | ||||| | | |
|
|
| T |
37970425 |
atcatgtcgatagcaagtgtgcaccaaacgcatgataggataaaataatgctatcatcttttttatcaagtgtgcaccaaatgcatgataggataaatgt |
37970524 |
T |
|
| Q |
143 |
ctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||||| | ||||||||||| |||||||| ||||||||| || ||||| ||||||||| |
|
|
| T |
37970525 |
ttatcctgtcactatcatatcttatccttaaccagcttcttattctatcttgtctctat |
37970583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 2333377 - 2333256
Alignment:
| Q |
102 |
ttcttatcatgtgt-gcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctcta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| | | |||| | |||||||| |||| ||||||||||||| | | || ||||| | | |||| |
|
|
| T |
2333377 |
ttcttatcatgtgttgcaccaaacacatgatatgataa-tgtttatcttgttactatcgtatcctatccttatccagtatgttattctatcctatttcta |
2333279 |
T |
|
| Q |
201 |
ttatatcctgcgcaccaaacgga |
223 |
Q |
| |
|
| ||||| ||| ||||||||||| |
|
|
| T |
2333278 |
tcatatcatgcacaccaaacgga |
2333256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 39595401 - 39595557
Alignment:
| Q |
67 |
caaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcata |
166 |
Q |
| |
|
|||||| |||| | |||||||||| ||||||| |||||||||||||||||| ||||| |||| | |||||| ||||| | | |||||| |||| || |
|
|
| T |
39595401 |
caaacaaatgacaggataaaataatgatatcatgattcttatcatgtgtgcactaaacatatgatagcataagtgactatcatgtcactatcctatc-ta |
39595499 |
T |
|
| Q |
167 |
tccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggac |
224 |
Q |
| |
|
|||||||||| ||| | || |||| | ||| |||| |||| |||| ||||||||||| |
|
|
| T |
39595500 |
tccttatccaactttttattatatcttatctatattctatcatgcgtaccaaacggac |
39595557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 42078112 - 42078193
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaac |
124 |
Q |
| |
|
|||||||||| | ||| || |||||||| | |||||| |||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
42078112 |
atcatgtcaatagcaaatgtgcatcaaaaatatgatatgataaaataatgttatcatatttcttatcatgcgtgcaccaaac |
42078193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 44108478 - 44108606
Alignment:
| Q |
94 |
tatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcat |
193 |
Q |
| |
|
||||||| ||||||||||||| | ||||| ||||||| | ||||| | | |||| | | ||||||||||| |||| |||| || | ||| || ||||||| |
|
|
| T |
44108478 |
tatcatctttcttatcatgtgagtaccaa-cacatgataggataaatgtatatcttgtcactatcatatcctatctttattcaacctcttattctatcat |
44108576 |
T |
|
| Q |
194 |
gtctctattatatcct-gcgcaccaaacgg |
222 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |
|
|
| T |
44108577 |
gtttctatcatatcctaacgcaccaaacgg |
44108606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 26449048 - 26449227
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtat |
142 |
Q |
| |
|
|||||||||| ||||| || ||| ||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||| ||||| | ||||||| | |
|
|
| T |
26449048 |
atcatgtcaataacaaatgtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgt |
26449147 |
T |
|
| Q |
143 |
ctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgga |
223 |
Q |
| |
|
||||| | | ||||||||||||||| ||||||| ||||||| ||||| | ||||| | ||||| ||||||| ||||||| |
|
|
| T |
26449148 |
ctatcatgtcactatcatatcatatttttatccattttctaat-ctatcctatctctgtcatatcttgcgcactaaacgga |
26449227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 9198021 - 9198183
Alignment:
| Q |
63 |
gcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcacca--aacacatgaaatgataagtatctatcctattactatcat |
160 |
Q |
| |
|
||||||||||||| ||| |||||||||| | ||||||| || ||||||||||||||||| ||| |||| ||||||||| |||||| ||| ||||||| |
|
|
| T |
9198021 |
gcatcaaacacataatatgataaaataatattatcatcttttttatcatgtgtgcaccaagaacgtatgacatgataagtgtctatcttatccctatcat |
9198120 |
T |
|
| Q |
161 |
atcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgga |
223 |
Q |
| |
|
||| |||| |||| || || ||||| |||||| ||||| | ||||||||| || |||||||| |
|
|
| T |
9198121 |
atcctatctttattcattttttaatcttatcatatctctttcatatcctgcacatcaaacgga |
9198183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 13416440 - 13416285
Alignment:
| Q |
67 |
caaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcata |
166 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||| | | ||||| | | |||| | | |||||||||||||| |
|
|
| T |
13416440 |
caaacacatgatgaaataaaataatgctatcatctttcttatcatatgtgcaccaaacacataataggataa-tgtttatcatgtcactatcatatcata |
13416342 |
T |
|
| Q |
167 |
tccttatccagc-ttctaatcctatcatgtctctattatatcctgcgcaccaaacgg |
222 |
Q |
| |
|
|||||||||||| || | |||||||| ||| | ||| ||||| |||||||||||||| |
|
|
| T |
13416341 |
tccttatccagcttttttatcctatcttgtttatatcatatcatgcgcaccaaacgg |
13416285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 34732718 - 34732841
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||| ||||||| ||||| |||||| ||| | ||||| | |||||||||| ||||||||||||| |||||||| |||| ||| |||| | ||| ||| |
|
|
| T |
34732718 |
ttctaatcatgtttgcacaaaacacgtgataggataatagtttatcctattattatcatatcatattcttatccaatttcttatcatatcctatctatat |
34732817 |
T |
|
| Q |
202 |
tatatcctgcgcaccaaacggact |
225 |
Q |
| |
|
||||| ||| ||||||||||||| |
|
|
| T |
34732818 |
catatcatgcacaccaaacggact |
34732841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 39466643 - 39466762
Alignment:
| Q |
106 |
tatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattata |
205 |
Q |
| |
|
|||||| ||||| ||||||| ||| ||||||| | | |||||| |||||||||||||||||| || ||| ||||| ||| ||| | |||||| ||| |
|
|
| T |
39466643 |
tatcatatgtgccccaaacatgtgatatgataaatgtatatcctgttactatcatatcatatctttgtcctacttcttatcatattccgactctatcata |
39466742 |
T |
|
| Q |
206 |
tcctgcgcaccaaacggact |
225 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
39466743 |
tcatgcgcaccaaacggact |
39466762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 32529083 - 32528944
Alignment:
| Q |
84 |
aaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttcta |
183 |
Q |
| |
|
||||||| | |||||| || ||||||| | |||||||||||||||| | |||||| |||||| ||| | ||||||||| |||| ||||| | ||| | |
|
|
| T |
32529083 |
aaaataatactatcatatttgttatcatctatgcaccaaacacatgatagaataagtgtctatcatatcagtatcatatcctatctttatctaacttttt |
32528984 |
T |
|
| Q |
184 |
atcctatcatgtctctattatatcctgcgcaccaaacgga |
223 |
Q |
| |
|
||| |||| |||| ||| ||||| || |||||||||||| |
|
|
| T |
32528983 |
atcatatcccgtctttatcatatcatgtgcaccaaacgga |
32528944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 42458846 - 42458811
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgata |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42458846 |
ttcttatcatgtgtgcaccaaacacatgacatgata |
42458811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 4075759 - 4075637
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | ||||||| |||||| | | ||||||||||| ||||||| |||| ||||| |||||||| || |||||| |
|
|
| T |
4075759 |
ttcttaccatgtgtgaaccaaacacatgataggataagtgtctatcttgtcactatcatatcctatccttgtccatcttcttatcctatcttgactctat |
4075660 |
T |
|
| Q |
202 |
tatatcctgcgcaccaaacggac |
224 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
4075659 |
cctatcatgcgcaccaaacggac |
4075637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 32712164 - 32712046
Alignment:
| Q |
103 |
tcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctatt |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||||||||| |||||||| || || ||| |||||||| ||||| |
|
|
| T |
32712164 |
tcttatcatgtgtgcaccaaacgcatgatagcataagtatctatcatgttactatcatatcatattcttatccaactccttatcatatcatgtgtctatc |
32712065 |
T |
|
| Q |
203 |
atatcctgcgcaccaaacg |
221 |
Q |
| |
|
|||| || |||||||||| |
|
|
| T |
32712064 |
ctatcatgtgcaccaaacg |
32712046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 42471365 - 42471273
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| | |||||| ||| | |||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
42471365 |
ttcttatcatgtgtgcaccaaacacatgatatgataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcatg |
42471273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 19806355 - 19806182
Alignment:
| Q |
44 |
tcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatc |
143 |
Q |
| |
|
||||| ||| |||||||| ||| ||||||| |||| ||||||||| | |||||| ||||||||| ||| |||||||||| | ||| || || |
|
|
| T |
19806355 |
tcatgacaataacaagtgtgcaccaaacactagatataataaaataatactatcatatttcttatcacgtgcgcaccaaacagaagaagtg-------tc |
19806263 |
T |
|
| Q |
144 |
tatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggac |
224 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||| |||||||| |||| |
|
|
| T |
19806262 |
tatcctgtcactatcatatcctatccttatccagcttcttatcctatcttgtctctatcctatcctgtgcaccaaatggac |
19806182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 9381955 - 9381885
Alignment:
| Q |
149 |
tattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||| ||||||||||| |
|
|
| T |
9381955 |
tattactatcatatcatatccttatccatcttctaatcctctcaggtctctatcctatcatgcgcaccaaa |
9381885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 44108879 - 44109006
Alignment:
| Q |
68 |
aaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatat |
167 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| || ||||||||||||| |||||||||||| | | |||| || ||||| ||||||||||||||| |
|
|
| T |
44108879 |
aaacacataatatgataaaataatgctatcatgtttattatcatgtgtgccccaaacacatgatagcacaagtgactgtcctaacactatcatatcatat |
44108978 |
T |
|
| Q |
168 |
ccttatccagcttctaatcctatcatgt |
195 |
Q |
| |
|
||||||||| ||||| ||| |||||||| |
|
|
| T |
44108979 |
ccttatccaacttcttatcatatcatgt |
44109006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 5786324 - 5786442
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||||||||||||| ||||||| | || ||||||||| | |||| | || |||| ||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5786324 |
ttcttatcatgtgtataccaaacgtaagatatgataagtgtttatcatgttgttatcctattctatccttatccagcttctaatcctatcatgtctttat |
5786423 |
T |
|
| Q |
202 |
tatatcctgcgcaccaaac |
220 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
5786424 |
cctatcttgcgcaccaaac |
5786442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 49288373 - 49288436
Alignment:
| Q |
159 |
atatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgg |
222 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||| ||| ||| ||||| |||||||||||||| |
|
|
| T |
49288373 |
atatcatatccttattcagcttcttatcatatcatatctatatcatatcatgcgcaccaaacgg |
49288436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 30952147 - 30952266
Alignment:
| Q |
104 |
cttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctatta |
203 |
Q |
| |
|
||||||||||| ||| ||||||||||| | ||||| | | |||| ||| ||||||||||| || |||||| ||| ||| ||||||||||||||| |
|
|
| T |
30952147 |
cttatcatgtgcgcatcaaacacatgataggataaatgt-tatcatatctatatcatatcatgtctctatccaatttcatatcatatcatgtctctattc |
30952245 |
T |
|
| Q |
204 |
tatcctgcgcaccaaacggac |
224 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
30952246 |
tatcatgcgcaccaaacggac |
30952266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 39284568 - 39284727
Alignment:
| Q |
65 |
atcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatca |
164 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||| || || ||||||||| ||| |||||||||||| |||||| | |||||| | ||||| || |||| |
|
|
| T |
39284568 |
atcaaacatatgatatgataaaataatgatatcctcatttttatcatgtttgccccaaacacatgatatgatagatgtctatcatgttactttcttatcc |
39284667 |
T |
|
| Q |
165 |
tatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggact |
225 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
39284668 |
tatctttatccaatttctaatcctattatgtctcta-tccatcctgcgcactaaacggact |
39284727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 26544404 - 26544479
Alignment:
| Q |
144 |
tatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaa |
219 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| | | | |||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
26544404 |
tatcctgtcactatcatatcatatccttatccaaccttttatcctatcatgtttctatcatatcctacgcaccaaa |
26544479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 33304206 - 33304045
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtat |
142 |
Q |
| |
|
||||||| || |||||||| |||||||| | || ||| ||||||| || | ||||||| |||||||||||||| || ||||||||| | || |||| | | |
|
|
| T |
33304206 |
atcatgttaataacaagtgtgcatcaaatatataataagataaaacaatattatcatctttcttatcatgtgtacatcaaacacataatataataaatgt |
33304107 |
T |
|
| Q |
143 |
ctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatat |
206 |
Q |
| |
|
|||||| || || |||||||| |||| ||||||| |||||||| |||| |||||||| |||| |
|
|
| T |
33304106 |
ctatcc-atcacgatcatatc-tatctttatccattttctaatcttatctagtctctatcatat |
33304045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 22573794 - 22573858
Alignment:
| Q |
160 |
tatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggac |
224 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
22573794 |
tatcatatccttatcgagctctttatcatatcatgtctctatactatcatgcgcaccaaacggac |
22573858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 23586412 - 23586532
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
|||||||||||||| ||||||| | || ||||||| | | |||| | || |||| |||| |||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
23586412 |
ttcttatcatgtgtataccaaacgtaagatatgataactgtttatcatgttgttatcctatcctatcattatccaacttataatcctatcatgtctctat |
23586511 |
T |
|
| Q |
202 |
tatatcctgcgcaccaaacgg |
222 |
Q |
| |
|
|||| |||||| ||||||| |
|
|
| T |
23586512 |
cctatcttgcgcatcaaacgg |
23586532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 40417621 - 40417766
Alignment:
| Q |
66 |
tcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcat |
165 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||| |||| ||||||| | | |||| | | ||| ||||||| | |
|
|
| T |
40417621 |
tcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaacatatgatatgataaatgt-tatcatgtcactgtcatatcct |
40417719 |
T |
|
| Q |
166 |
atccttatccagcttctaatcctatcatgtctctattatatcctgcg |
212 |
Q |
| |
|
||||||||||||||||| ||| |||| || ||||| |||||||||| |
|
|
| T |
40417720 |
atccttatccagcttcttatcatatcccgtgtctatcatatcctgcg |
40417766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 45818106 - 45817951
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtat |
142 |
Q |
| |
|
|||| ||||| ||||| || ||| |||||| |||||| |||||||||| |||| || |||||||||||||| ||||||| | || ||||||||| | |
|
|
| T |
45818106 |
atcacgtcaataacaaatgtgcaccaaacatatgataggataaaataatgttatc-tctttcttatcatgtgtataccaaacgtaagatatgataagtgt |
45818008 |
T |
|
| Q |
143 |
ctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctct |
199 |
Q |
| |
|
||||| | ||| ||| ||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
45818007 |
ctatcatgttattattttataatatccttatccaacttctaatcatatcatgtctct |
45817951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 20525556 - 20525639
Alignment:
| Q |
68 |
aaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctat |
151 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||| |||||||||| | |||||||||||||||| ||||||| || |||||||| |
|
|
| T |
20525556 |
aaacatatgatatgataaaataataatatcatctttcttatcatatctgcaccaaacacatgatatgataaatacatatcctat |
20525639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 48935819 - 48935675
Alignment:
| Q |
95 |
atcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctat-----tactatcatatcatatccttatccagcttctaatccta |
189 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| | ||||||| |||||| | | | ||||| |||| |||||||| ||| ||||||||||| |
|
|
| T |
48935819 |
atcatctttcttatcatgtgtacaccaaacacatgataggataagtgtctatcatgtcactatcctatcctatcctatccttaaccattttctaatccta |
48935720 |
T |
|
| Q |
190 |
tcatgtctctattatatcctgcgcaccaaacggactgtaaatgga |
234 |
Q |
| |
|
|||||||||| ||||| || |||| |||||||| |||||||| |
|
|
| T |
48935719 |
tcatgtctcttgaatatcatgtgcacaaaacggaccctaaatgga |
48935675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 32491573 - 32491668
Alignment:
| Q |
81 |
gataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatcca |
176 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||| |||||||||| ||| ||||||| | | || ||| ||||||||||||||||| |||||||| |
|
|
| T |
32491573 |
gataaaataatattatcaattttctaatcatgtgtacaccaaacacgtgatatgataactgtttaccctgttactatcatatcatattcttatcca |
32491668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 39794670 - 39794559
Alignment:
| Q |
113 |
tgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcg |
212 |
Q |
| |
|
|||||| ||||||||||| | ||||||| ||||| | | |||||| |||| |||||||||||| ||| | ||| |||||| |||||||| |||| ||| |
|
|
| T |
39794670 |
tgtgcatcaaacacatgatagcataagtaactatcatgtcactatcctatcttatccttatccaactttttatcatatcatatctctattctatcatgct |
39794571 |
T |
|
| Q |
213 |
caccaaacggac |
224 |
Q |
| |
|
|| |||||||| |
|
|
| T |
39794570 |
tactaaacggac |
39794559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 6149235 - 6149156
Alignment:
| Q |
142 |
tctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacg |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||| |||| || |||||||||| |
|
|
| T |
6149235 |
tctatcctatcactatcatatcatatccttatccaactttttatcctatcatgtctctatcctatcatgtgcaccaaacg |
6149156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 16599324 - 16599437
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtat |
142 |
Q |
| |
|
|||||||||| | |||||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||| ||||||| | ||||||||||| | |
|
|
| T |
16599324 |
atcatgtcaatatcaagtgtgcaccaaacacatgatagaattaaataatgctatcatctttcttatcatgtgttagccaaacataggaaatgataag--t |
16599421 |
T |
|
| Q |
143 |
ctatcctattactatc |
158 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16599422 |
gtatcctattactatc |
16599437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 4087006 - 4086959
Alignment:
| Q |
165 |
tatccttatccagcttctaatcctatcatgtctctattatatcctgcg |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
4087006 |
tatccttatccagcttctaatcatatcatgtgtctatcatatcctgcg |
4086959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 17991116 - 17991061
Alignment:
| Q |
138 |
agtatctatcctattactatcatatcatatccttatccagcttctaatcctatcat |
193 |
Q |
| |
|
|||||||||| | | |||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
17991116 |
agtatctatcatgtcactatcatattatatctttatccaacttctaatcctatcat |
17991061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 12771391 - 12771330
Alignment:
| Q |
114 |
gtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatcca |
176 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||| | ||| ||||||||| |||||||||||| |
|
|
| T |
12771391 |
gtgcaccaaacacatgataggataagt-tctatcatgttattatcatatcctatccttatcca |
12771330 |
T |
|
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 14518538 - 14518632
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgata |
137 |
Q |
| |
|
||||||| || |||||||| ||| |||||| |||||| |||||||||| | ||||||| |||||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
14518538 |
atcatgtgaataacaagtgtgcaccaaacatatgatatgataaaataatattatcatctttcttatcttgtgcgcatcaaacacatgatatgata |
14518632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 22205323 - 22205472
Alignment:
| Q |
73 |
catgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatcctta |
172 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||| || |||||||||| ||||| | ||||| | | |||||| | ||| |||| || | || ||| |
|
|
| T |
22205323 |
catgatacgataaaataatgctatcatcttttttatcaagtatgcaccaaacgcatgataggataaatgtttatcctctcactgtcatttcctttcttta |
22205422 |
T |
|
| Q |
173 |
tccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgg |
222 |
Q |
| |
|
|||||||||| ||| |||| || |||||| |||||||| |||||||||| |
|
|
| T |
22205423 |
tccagcttcttatcatatcctgcctctatcctatcctgcacaccaaacgg |
22205472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 14518662 - 14518732
Alignment:
| Q |
155 |
tatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggact |
225 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||| ||||||| ||||| |||| |||||| ||||| |
|
|
| T |
14518662 |
tatcatatcatatccttatcgagattctaatcctaacatatctctatcatatcttgcgtaccaaatggact |
14518732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 50876912 - 50877008
Alignment:
| Q |
105 |
ttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctat |
201 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||| || | |||| | | | |||| ||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
50876912 |
ttatcatgtgtccaccaaacgcatgatatgataggtgtatatcatgtcattatcgtatcatatccttatccaacttataatcacatcatgtctctat |
50877008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 26634666 - 26634551
Alignment:
| Q |
115 |
tgcaccaaacacatgaaatgataagt-------atctatcctattactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatc |
207 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||| ||||||||||| |||| ||||||| ||||||| ||||||||||| ||| ||||| |
|
|
| T |
26634666 |
tgcaccaaacacatgatatgataagtgtcttgtatctatcttatcactatcatatc-tatctttatccattttctaattctatcatgtctgtatcatatc |
26634568 |
T |
|
| Q |
208 |
ctgcgcaccaaacggac |
224 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
26634567 |
atacgcatcaaacggac |
26634551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 34667131 - 34667220
Alignment:
| Q |
102 |
ttcttatcatgtgtgcaccaaacacatgaaatgataagtatctatcctattactatcatatcatatccttatccagcttctaatcctatc |
191 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | ||||| ||| |||| | | ||||||||||| |||| ||||||| || |||||||||| |
|
|
| T |
34667131 |
ttcttatcatgtttgcaccaaacatatgagaggataaatatttatcatgtcactatcatatcctatctttatccattttttaatcctatc |
34667220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 2184046 - 2184086
Alignment:
| Q |
155 |
tatcatatcatatccttatccagcttctaatcctatcatgt |
195 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2184046 |
tatcatatcatatccttatccatcttcttatcctatcatgt |
2184086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 33235270 - 33235200
Alignment:
| Q |
153 |
actatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacgga |
223 |
Q |
| |
|
|||||| ||||||||||||||||| || | ||| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
33235270 |
actatcctatcatatccttatccaactctttatcatatcatgtctctatcctattatgcgcaccaaacgga |
33235200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 3377 - 3304
Alignment:
| Q |
151 |
ttactatcatatcatatccttatccagcttctaatcctatcatgtctctattatatcctgcgcaccaaacggac |
224 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||||||| |||| ||||||| |
|
|
| T |
3377 |
ttactatcctatcatatccttatccaacttctaatcgtatcacgtctctatcctatcctgcacacctaacggac |
3304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0377 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0377
Description:
Target: scaffold0377; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 11911 - 11992
Alignment:
| Q |
43 |
atcatgtcaagaacaagtgagcatcaaacacatgatacgataaaataagaatatcatccttcttatcatgtgtgcaccaaac |
124 |
Q |
| |
|
|||||||||| | ||| || |||||||| |||||||| |||||||||| |||||| ||| ||||||| ||||||||||| |
|
|
| T |
11911 |
atcatgtcaatagcaaatgtgcatcaaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaaac |
11992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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