View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_53 (Length: 338)
Name: NF21120_high_53
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_53 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 31505957 - 31505625
Alignment:
| Q |
6 |
aggagcacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttct |
105 |
Q |
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| T |
31505957 |
aggaacacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggtttttct |
31505858 |
T |
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| Q |
106 |
agaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgttctcaccg |
205 |
Q |
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| T |
31505857 |
agaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactaggtaacaaggaaatgttctcaccg |
31505758 |
T |
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| Q |
206 |
ttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagatccactttttgcaacctacaaacagaacttttgtta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31505757 |
ttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctacaaacagaacttttgtta |
31505658 |
T |
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| Q |
306 |
gcttaaccatagcagattgaagtacataataca |
338 |
Q |
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| T |
31505657 |
gcttaaccatagcagattgaagtacataataca |
31505625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 27608293 - 27608630
Alignment:
| Q |
6 |
aggagcacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttc |
104 |
Q |
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| T |
27608293 |
aggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
27608392 |
T |
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| Q |
105 |
-tagaaggatgtaaccagca---tagttgccttttgcataac--agactacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgtt |
198 |
Q |
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| T |
27608393 |
ctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt |
27608492 |
T |
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| Q |
199 |
ctcaccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagatccactttttgcaacctacaaacagaact |
298 |
Q |
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| T |
27608493 |
ctcaccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctgcaaacagaact |
27608592 |
T |
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| Q |
299 |
tttgttagcttaaccatagcagattgaagtacataata |
336 |
Q |
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| T |
27608593 |
tttgttagcataaccatagcagattgaagtacagaata |
27608630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 34496749 - 34497082
Alignment:
| Q |
6 |
aggagcacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttc |
104 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||||| || ||||||||||||||| |||||||||||||| |||||||||| ||||||| |
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| T |
34496749 |
aggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttc |
34496848 |
T |
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| Q |
105 |
-tagaaggatgtaaccagcatagttgccttttgcataacaga-ctacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgttctca |
202 |
Q |
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| T |
34496849 |
ctagaaggatgtaaccaacatagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca |
34496948 |
T |
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| Q |
203 |
ccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagatccactttttgcaacctacaaacagaacttttg |
302 |
Q |
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| T |
34496949 |
ccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctgcaaacagaacttttg |
34497048 |
T |
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| Q |
303 |
ttagcttaaccatagcagattgaagtacataata |
336 |
Q |
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| T |
34497049 |
ttagcataaccatagcagattgaagtacagaata |
34497082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 51683738 - 51683799
Alignment:
| Q |
208 |
gagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacaga |
269 |
Q |
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|||||||||||||| |||||||||||||| |||| ||||||||| || ||||| | |||||| |
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| T |
51683738 |
gagctgatgtgcataacatgggaatatcgctcaatattcataagtttttcaacttgaacaga |
51683799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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