View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_55 (Length: 332)
Name: NF21120_high_55
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 31658748 - 31659044
Alignment:
| Q |
20 |
aggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatg |
119 |
Q |
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| T |
31658748 |
aggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatg |
31658847 |
T |
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| Q |
120 |
gtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctga |
219 |
Q |
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| T |
31658848 |
gtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctga |
31658947 |
T |
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| Q |
220 |
atgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcacag |
316 |
Q |
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| T |
31658948 |
atgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttcaacatgtttgattgcttcacag |
31659044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 31657342 - 31657175
Alignment:
| Q |
148 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgg |
247 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatgg |
31657243 |
T |
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| Q |
248 |
ccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
315 |
Q |
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| T |
31657242 |
tcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca |
31657175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 315
Target Start/End: Complemental strand, 31650457 - 31650164
Alignment:
| Q |
31 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtg---atggtggaaac |
127 |
Q |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
128 |
gagttttcttctttaattggaatgttgttatca---aaactgagtaatatagaagagtca---tttgatgacacaatggattccaaatttatatctgaat |
221 |
Q |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtcaacatcataggagaaaattgattccaaatttaagtctgaat |
31650258 |
T |
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| Q |
222 |
gcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
315 |
Q |
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| || | |||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
31650257 |
ggtaagagcttttgcaagtgtgatggccataatatgtagtccggtacaacgaagggttcttttgtattctttgaacatgtttgattgcttcaca |
31650164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 31628760 - 31628832
Alignment:
| Q |
231 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgttt |
303 |
Q |
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| T |
31628760 |
ttttgcaattatgatggccataatatatggttctgtataatggagggtcctcttgaattctttgcacatgttt |
31628832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
68 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
112 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 31678631 - 31678547
Alignment:
| Q |
231 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
315 |
Q |
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| T |
31678631 |
ttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca |
31678547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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