View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_64 (Length: 306)
Name: NF21120_high_64
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_64 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 40960161 - 40959890
Alignment:
| Q |
23 |
cacagaaaataatgaccacatatgccaaagatatggattatagtactattttatcatcaattgatcacatatggccaccaaaatattggtccaataattt |
122 |
Q |
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| T |
40960161 |
cacagaaaataatgaccacatatgccaaagatatggattatagtactattttatcatcaattgatcacatatggccaccaaaatattggttcaataattt |
40960062 |
T |
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| Q |
123 |
g----ccctatgtgatcaattaacccaagaaggatgcctcaatgaaaatacaagaaaaacaaatcattgggtccaatgcagggtggtctgtggtcaccat |
218 |
Q |
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| T |
40960061 |
gttggccctatgtgatcaattaacccaagaaggatgcctcaatgaaaatacaagaaaaacaaatcattgggtccaatgcagggtggtctgtggtcaccat |
40959962 |
T |
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| Q |
219 |
tgctaaagaacatatgacaagagtttttagatctttcactaggatctgattagaagttaaacatgttcttag |
290 |
Q |
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| T |
40959961 |
tgctaaagaacatatgacaagagtttttagatctttcactaggatctgattagaagttaaacatgttcttag |
40959890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 22506429 - 22506487
Alignment:
| Q |
148 |
aaggatgcctcaatgaaaatacaagaaaaacaaatcattgggtccaatgcagggtggtc |
206 |
Q |
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| T |
22506429 |
aaggatgcctccatgaaaatacaagaaaattaaatcattgggtccaatgcagggtggtc |
22506487 |
T |
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