View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_75 (Length: 282)
Name: NF21120_high_75
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 28567920 - 28568100
Alignment:
| Q |
8 |
cagcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28567920 |
cagcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtt |
28568019 |
T |
|
| Q |
108 |
tttcttcaaacattcttttgttacacttcaagctgtcaaataaatctatgcaacaattatagttagtcactatattactaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
28568020 |
tttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 28574750 - 28574998
Alignment:
| Q |
10 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
28574750 |
gcagagatatcctacatcgttaagactatcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaatcctcaccatgtttt |
28574849 |
T |
|
| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctatgcaacaattatagttagtcactatattactaactgaatactcctatagtataa |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
28574850 |
tcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattacta----aatactcctatagtaaaa |
28574945 |
T |
|
| Q |
210 |
cta--tattcaaatgtggagagggtatgtattatacaaacctgcatttacata |
260 |
Q |
| |
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|| ||||||||||| ||||||||| | |||| || |||||||||| ||||| |
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|
| T |
28574946 |
ttatgtattcaaatgtagagagggtacgaattaaactaacctgcattgacata |
28574998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 28579802 - 28580055
Alignment:
| Q |
10 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || || || |||| |||| |
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| T |
28579802 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagtgtaattagaccttttacttcttctccatgtttt |
28579901 |
T |
|
| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctatgcaacaattatagttagtcactatattactaactgaatactcctatagtataa |
209 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
28579902 |
tctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcctagtaaatta |
28580001 |
T |
|
| Q |
210 |
ctatattcaaatgtggagagggtatgtattatacaaacctgcatttacataatgg |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||| |||||| |
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|
| T |
28580002 |
-tatattcaaatgtggagagggtacgtattaaactaacctgcatttacgtaatgg |
28580055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 28585949 - 28586154
Alignment:
| Q |
10 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||| |
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|
| T |
28585949 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagagcaataagacctttgacatcctcgccatgtttt |
28586048 |
T |
|
| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctatgcaacaattatagttagtcactatattactaactgaatactcctatagtataa |
209 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| || |
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|
| T |
28586049 |
tctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaactaaatactcctatagtaaaa |
28586148 |
T |
|
| Q |
210 |
ctatat |
215 |
Q |
| |
|
||||| |
|
|
| T |
28586149 |
ttatat |
28586154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 26315811 - 26316059
Alignment:
| Q |
17 |
tatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttcttcaa |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| | |
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|
| T |
26315811 |
tatcctaaatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagggcaacgagacctttcacatcctcgccatgtttttcttcga |
26315910 |
T |
|
| Q |
117 |
acattcttttgttacacttcaagctgtcaaataaatctatgcaaca--attatagttagtcactatattactaact-gaatactcctatagtataa-cta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||| || || |
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| T |
26315911 |
acattcttttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaactaaaatact--tatagtaaaatata |
26316008 |
T |
|
| Q |
213 |
tattcaaatgtggagagggtatgtattatacaaacctgcatttacataatg |
263 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||||||||||||| |
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|
| T |
26316009 |
tattcaaatgtggagagtgtaagtattaaactaacctgcatttacataatg |
26316059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 20617136 - 20617254
Alignment:
| Q |
32 |
agactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttct-tcaaacattcttttgtta |
130 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||| || |||| ||| ||||| || |
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| T |
20617136 |
agaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacctttcacatcctcaccatattttactctcaatgatt-ttttgcta |
20617234 |
T |
|
| Q |
131 |
cacttcaagctgtcaaataa |
150 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
20617235 |
cacttcaagcagtcaaataa |
20617254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 28568106 - 28568159
Alignment:
| Q |
211 |
tatattcaaatgtggagagggtatgtattatacaaacctgcatttacataatgg |
264 |
Q |
| |
|
||||||||| | |||||||| | ||||||| |||||||||||||||| |||||| |
|
|
| T |
28568106 |
tatattcaattttggagaggatctgtattaaacaaacctgcatttacgtaatgg |
28568159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 24071371 - 24071559
Alignment:
| Q |
11 |
cagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatattttt |
110 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
24071371 |
cagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtgttt |
24071470 |
T |
|
| Q |
111 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctatgcaacaattatagttagtcactatattactaactgaatactcc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
24071471 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaactaaatactcc |
24071559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 24079365 - 24079221
Alignment:
| Q |
11 |
cagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatattttt |
110 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24079365 |
cagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgttttt |
24079266 |
T |
|
| Q |
111 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatcta |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24079265 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatcta |
24079221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
| Q |
37 |
atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttcttcaaacattcttttgttacacttc |
136 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| || | |||||||||| ||||||||||||||| ||||||| ||| |||| |||||| || || |
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|
| T |
2601542 |
atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc |
2601443 |
T |
|
| Q |
137 |
aagctgtcaaataaatct |
154 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2601442 |
aagctgtcaaatatatct |
2601425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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