View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_77 (Length: 271)
Name: NF21120_high_77
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_77 |
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| [»] chr7 (14 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 10498173 - 10497913
Alignment:
| Q |
11 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10498173 |
cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt |
10498074 |
T |
|
| Q |
111 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10498073 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
10497974 |
T |
|
| Q |
211 |
caactatccttcatgaaaggtatctttattcatgaatatcaagcagcacagtatgcacaat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10497973 |
caactatccttcatgaaaggtatctttattcatgaatatcaagcagcacagtatgcacaat |
10497913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 10503202 - 10502942
Alignment:
| Q |
11 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10503202 |
cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt |
10503103 |
T |
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| Q |
111 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503102 |
ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttac |
10503003 |
T |
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| Q |
211 |
caactatccttcatgaaaggtatctttattcatgaatatcaagcagcacagtatgcacaat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503002 |
caactatccttcatgaaaggtatctttattcatgaatatcaagcagcacagtatgcacaat |
10502942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 13336360 - 13336215
Alignment:
| Q |
126 |
ctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttaccaactatccttcatg |
225 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13336360 |
ctatttaggaaggaggtcatggccacagttatatttggtcctaataatgtttgcacacatagtattcgttatattacaaagttaccaactatccttcatg |
13336261 |
T |
|
| Q |
226 |
aaaggtatctttattcatgaatatcaagcagcacagtatgcacaat |
271 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13336260 |
aaaggtatctttattcaaaaatatcaagcagcacagtatgcacaat |
13336215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 13336789 - 13336699
Alignment:
| Q |
14 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
104 |
Q |
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|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13336789 |
agaaggaatttaggagtcccagatagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
13336699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 10532969 - 10532879
Alignment:
| Q |
14 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
104 |
Q |
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|||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10532969 |
agaaggaatttatgaaccccaggaagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta |
10532879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 10532593 - 10532680
Alignment:
| Q |
14 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
101 |
Q |
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|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
10532593 |
agaaggaatttaggagccccaggaagtttagactgaacatgtcctcaaacatcttcttcactctaaccataggtggagctcgcctaaa |
10532680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 13344683 - 13344568
Alignment:
| Q |
14 |
agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatttta |
113 |
Q |
| |
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||||||||||| |||| |||| || ||||| | ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||| |
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| T |
13344683 |
agaaggaattttggagacccaagaagtttagatttaatatgtcctcaaacatcttcttcattctaaccattaatggagctcgtctaaacttaggatttta |
13344584 |
T |
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| Q |
114 |
gacgagctgcacctat |
129 |
Q |
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||||||||||| |||| |
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| T |
13344583 |
gacgagctgcaactat |
13344568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 10532749 - 10532661
Alignment:
| Q |
41 |
ttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattttagacgagctgcacctat |
129 |
Q |
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|||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||| | ||||||| |||||| ||||||| |
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| T |
10532749 |
ttagactgaacgtgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaagaattttaggcgagctccacctat |
10532661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 10500066 - 10500157
Alignment:
| Q |
11 |
cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
101 |
Q |
| |
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|||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
10500066 |
cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa |
10500157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 10505095 - 10505186
Alignment:
| Q |
11 |
cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
101 |
Q |
| |
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|||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
10505095 |
cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa |
10505186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 13344449 - 13344331
Alignment:
| Q |
11 |
cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt |
110 |
Q |
| |
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|||||||| |||| |||| ||||| || |||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| |
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| T |
13344449 |
cagagaagtaattgaggaaccccatgaagtttagactgaacctgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaattatt |
13344350 |
T |
|
| Q |
111 |
ttagacgagctgcacctat |
129 |
Q |
| |
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|||| |||||| ||||||| |
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| T |
13344349 |
ttaggcgagctccacctat |
13344331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 10500255 - 10500138
Alignment:
| Q |
12 |
agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt |
111 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| ||| |||| ||||||||| | | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
10500255 |
agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt |
10500156 |
T |
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| Q |
112 |
tagacgagctgcacctat |
129 |
Q |
| |
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|||||||||| ||||||| |
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| T |
10500155 |
tagacgagctccacctat |
10500138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 10505284 - 10505167
Alignment:
| Q |
12 |
agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt |
111 |
Q |
| |
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||||||| |||| |||||||||| || |||||| ||| |||| ||||||||| | | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
10505284 |
agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt |
10505185 |
T |
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| Q |
112 |
tagacgagctgcacctat |
129 |
Q |
| |
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|||||||||| ||||||| |
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| T |
10505184 |
tagacgagctccacctat |
10505167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 13344503 - 13344587
Alignment:
| Q |
17 |
aggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa |
101 |
Q |
| |
|
||||||||| ||||||||| || |||||||||| |||||||||| ||||||| |||||||||||| | || ||||||||||| |
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| T |
13344503 |
aggaatttatgagccccaggaagtttagactgaacgtgtcctcaaatatcttctccactctaaccatagttgcagctcgtctaaa |
13344587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 35457110 - 35456989
Alignment:
| Q |
11 |
cagagaaggaatttaggagcc-ccagaaacattagactgaatatgtcctcaaacatcttcttcactcta----accattggtggggctcgtctaaactac |
105 |
Q |
| |
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|||| |||||||| ||||||| |||| || ||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
35457110 |
cagaaaaggaattgaggagcctccaggaagtttagactgaatat--cctcaaacatcttctccactctatataaccattggtgtggctcgtctaaactaa |
35457013 |
T |
|
| Q |
106 |
ggattttagacgagctgcacctat |
129 |
Q |
| |
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||||||||||||| || ||||||| |
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| T |
35457012 |
ggattttagacgatctccacctat |
35456989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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