View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_high_82 (Length: 262)

Name: NF21120_high_82
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_high_82
NF21120_high_82
[»] chr7 (2 HSPs)
chr7 (110-244)||(7985135-7985269)
chr7 (22-59)||(7985103-7985140)
[»] chr3 (3 HSPs)
chr3 (132-168)||(31502154-31502190)
chr3 (135-169)||(27612021-27612055)
chr3 (130-170)||(39553856-39553896)
[»] scaffold0022 (1 HSPs)
scaffold0022 (137-170)||(144825-144858)
[»] chr2 (3 HSPs)
chr2 (132-169)||(34960306-34960343)
chr2 (136-172)||(6700449-6700485)
chr2 (132-168)||(36705588-36705624)
[»] chr8 (2 HSPs)
chr8 (137-169)||(8937692-8937724)
chr8 (137-169)||(30506232-30506264)
[»] chr1 (1 HSPs)
chr1 (137-169)||(47443544-47443576)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 7985135 - 7985269
Alignment:
Q  110 caaaaactacaatagcacgcgtcaccgtgattctgccaaactcaccgtcaatccaaacatacattgagttgaattttgctaaaacaatacatcagatcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7985135 caaaaactacaatagcacgcgtcaccgtgattctgccaaactcaccgtcaatccaaacatacattgagttgaattttgccaaaacaatacatcagatcat 7985234  T
Q  210 tgtcttatacgttacaataacgtaaagacaatttc 244  Q
    |||||||||||||||||||||||||||||||||||    
T  7985235 tgtcttatacgttacaataacgtaaagacaatttc 7985269  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 7985103 - 7985140
Alignment:
Q  22 cagagacactaaaatgatggatctcaatttgacaaaaa 59  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7985103 cagagacaataaaatgatggatctcaatttgacaaaaa 7985140  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 31502190 - 31502154
Alignment:
Q  132 caccgtgattctgccaaactcaccgtcaatccaaaca 168  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31502190 caccgtgattctgccaaactcactgtcaatccaaaca 31502154  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 27612021 - 27612055
Alignment:
Q  135 cgtgattctgccaaactcaccgtcaatccaaacat 169  Q
    ||||||||||||||| |||||||||||||||||||    
T  27612021 cgtgattctgccaaattcaccgtcaatccaaacat 27612055  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 39553856 - 39553896
Alignment:
Q  130 gtcaccgtgattctgccaaactcaccgtcaatccaaacata 170  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  39553856 gtcaccgtgattttaccaaactcactgtcaatccaaacata 39553896  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 144858 - 144825
Alignment:
Q  137 tgattctgccaaactcaccgtcaatccaaacata 170  Q
    ||||||||||||||||||||||||| ||||||||    
T  144858 tgattctgccaaactcaccgtcaattcaaacata 144825  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 34960306 - 34960343
Alignment:
Q  132 caccgtgattctgccaaactcaccgtcaatccaaacat 169  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  34960306 caccgtgattctgtcaaactcaccgtgaatccaaacat 34960343  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 6700485 - 6700449
Alignment:
Q  136 gtgattctgccaaactcaccgtcaatccaaacataca 172  Q
    |||||||||||||| |||||||||| |||||||||||    
T  6700485 gtgattctgccaaattcaccgtcaaaccaaacataca 6700449  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 36705588 - 36705624
Alignment:
Q  132 caccgtgattctgccaaactcaccgtcaatccaaaca 168  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  36705588 caccctgattctaccaaactcaccgtcaatccaaaca 36705624  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 8937692 - 8937724
Alignment:
Q  137 tgattctgccaaactcaccgtcaatccaaacat 169  Q
    ||||||||||||| |||||||||||||||||||    
T  8937692 tgattctgccaaattcaccgtcaatccaaacat 8937724  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 30506264 - 30506232
Alignment:
Q  137 tgattctgccaaactcaccgtcaatccaaacat 169  Q
    ||||||||||||||||||||| |||||||||||    
T  30506264 tgattctgccaaactcaccgttaatccaaacat 30506232  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 47443544 - 47443576
Alignment:
Q  137 tgattctgccaaactcaccgtcaatccaaacat 169  Q
    ||||||||||||||||||||| |||||||||||    
T  47443544 tgattctgccaaactcaccgtgaatccaaacat 47443576  T

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