View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_85 (Length: 257)
Name: NF21120_high_85
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 52249592 - 52249837
Alignment:
| Q |
1 |
acattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaaccacttttta |
100 |
Q |
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| T |
52249592 |
acattgctccagaggttttattacgaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaatcacttttta |
52249691 |
T |
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| Q |
101 |
tggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattcagtt |
200 |
Q |
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| T |
52249692 |
tggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttag-taaaaattgtcgattcagtt |
52249790 |
T |
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| Q |
201 |
agtgtttttgactatttttgtatagattgcagatgtgtggtcctatg |
247 |
Q |
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| T |
52249791 |
agtgtttttgactatttttgtatagattgcagatgtgtgttcctatg |
52249837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 41120034 - 41120275
Alignment:
| Q |
1 |
acattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttc--ttaaaaaccacgtttcaaaccactttt |
98 |
Q |
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| T |
41120034 |
acattactcctgaggttctgttacaaaaggagtacgacagaaaggtgcctgagattttctctatcattttcgattaaaaactacgtttcaaactacttct |
41120133 |
T |
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| Q |
99 |
tatggctattaacgaccatcgtttaacaattgacaaata-taataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattca |
197 |
Q |
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| T |
41120134 |
tatggct-taaacaaccatggtttaacaattgacaaatagtaatagtacagtctcgtattgattaaaaagttcacggtttagtaaaaaa-tgtcgattca |
41120231 |
T |
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| Q |
198 |
gttagtgtttttgactatttttgtatagattgcagatgtgtggtcct |
244 |
Q |
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| T |
41120232 |
gttagtgtttttggc---tcttgtgtagattgcagatatgtggtcct |
41120275 |
T |
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