View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_high_87 (Length: 252)

Name: NF21120_high_87
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_high_87
NF21120_high_87
[»] chr3 (17 HSPs)
chr3 (1-244)||(12938401-12938644)
chr3 (1-244)||(50650366-50650609)
chr3 (1-220)||(31658794-31659012)
chr3 (46-244)||(29833275-29833473)
chr3 (48-244)||(33216676-33216872)
chr3 (159-244)||(53282152-53282237)
chr3 (162-244)||(39833366-39833448)
chr3 (160-244)||(5232805-5232889)
chr3 (163-223)||(29703673-29703733)
chr3 (1-103)||(39833205-39833307)
chr3 (159-244)||(36950291-36950376)
chr3 (160-244)||(20104181-20104265)
chr3 (5-103)||(5232946-5233044)
chr3 (5-103)||(20104322-20104420)
chr3 (50-103)||(36950181-36950234)
chr3 (32-103)||(29703541-29703612)
chr3 (32-103)||(53282294-53282365)
[»] chr5 (9 HSPs)
chr5 (1-244)||(1828412-1828655)
chr5 (1-244)||(40313877-40314120)
chr5 (1-244)||(41413417-41413660)
chr5 (1-244)||(30624864-30625107)
chr5 (6-244)||(31482048-31482286)
chr5 (162-244)||(24788459-24788541)
chr5 (159-223)||(39884575-39884639)
chr5 (1-103)||(24788298-24788400)
chr5 (50-103)||(39884696-39884749)
[»] chr4 (17 HSPs)
chr4 (1-244)||(27292946-27293189)
chr4 (1-244)||(4919015-4919257)
chr4 (1-244)||(42976331-42976573)
chr4 (156-244)||(24228273-24228361)
chr4 (162-244)||(20133269-20133351)
chr4 (179-244)||(55919539-55919604)
chr4 (3-93)||(45989586-45989676)
chr4 (1-93)||(42069020-42069112)
chr4 (1-103)||(20133410-20133512)
chr4 (1-103)||(55919361-55919463)
chr4 (160-244)||(42069168-42069252)
chr4 (160-244)||(47031581-47031665)
chr4 (159-223)||(15531344-15531408)
chr4 (1-103)||(28679508-28679610)
chr4 (3-93)||(47031435-47031525)
chr4 (179-244)||(45989751-45989816)
chr4 (32-103)||(15531216-15531287)
[»] chr1 (9 HSPs)
chr1 (1-244)||(27286164-27286407)
chr1 (1-244)||(52385788-52386031)
chr1 (6-249)||(39241553-39241793)
chr1 (162-244)||(12981380-12981462)
chr1 (1-103)||(12981521-12981623)
chr1 (1-103)||(45348242-45348344)
chr1 (3-93)||(45325611-45325701)
chr1 (162-244)||(45348403-45348485)
chr1 (160-233)||(45325749-45325822)
[»] chr6 (3 HSPs)
chr6 (1-243)||(12938643-12938885)
chr6 (1-220)||(33694805-33695023)
chr6 (5-190)||(28138018-28138202)
[»] chr2 (18 HSPs)
chr2 (1-244)||(14096256-14096499)
chr2 (1-116)||(18977085-18977200)
chr2 (1-103)||(15330735-15330837)
chr2 (162-244)||(17690463-17690545)
chr2 (1-103)||(37261671-37261773)
chr2 (162-243)||(16429724-16429805)
chr2 (160-244)||(37078806-37078890)
chr2 (1-103)||(14810089-14810191)
chr2 (1-103)||(16429864-16429966)
chr2 (1-103)||(17690604-17690706)
chr2 (183-244)||(15330593-15330654)
chr2 (162-244)||(14810250-14810331)
chr2 (159-244)||(7089083-7089168)
chr2 (159-243)||(33755203-33755287)
chr2 (5-103)||(37078947-37079045)
chr2 (32-103)||(7089225-7089296)
chr2 (157-244)||(18977216-18977303)
chr2 (50-103)||(33755093-33755146)
[»] chr7 (13 HSPs)
chr7 (1-244)||(19436672-19436915)
chr7 (1-244)||(29833919-29834162)
chr7 (69-244)||(29258387-29258562)
chr7 (162-244)||(45972282-45972364)
chr7 (160-244)||(29243239-29243323)
chr7 (160-244)||(47327801-47327885)
chr7 (1-103)||(45972423-45972525)
chr7 (3-93)||(6442636-6442726)
chr7 (160-244)||(34093977-34094061)
chr7 (20-92)||(34094118-34094190)
chr7 (26-103)||(29243380-29243455)
chr7 (5-103)||(47327942-47328040)
chr7 (179-244)||(6442496-6442561)
[»] chr8 (9 HSPs)
chr8 (6-244)||(13802659-13802897)
chr8 (162-244)||(531543-531625)
chr8 (1-103)||(531684-531786)
chr8 (29-153)||(23613574-23613699)
chr8 (160-244)||(30945584-30945671)
chr8 (26-103)||(30945452-30945527)
chr8 (50-103)||(3879490-3879543)
chr8 (159-244)||(3879600-3879685)
chr8 (29-93)||(23614274-23614338)
[»] scaffold0166 (2 HSPs)
scaffold0166 (162-244)||(30842-30924)
scaffold0166 (1-103)||(30681-30783)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 12938644 - 12938401
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12938644 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 12938545  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12938544 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 12938445  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12938444 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 12938401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 50650366 - 50650609
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||| ||||||    
T  50650366 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 50650465  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   | | |||    
T  50650466 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 50650565  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||| |||||| |||||| || ||||||||| ||||||||||    
T  50650566 cgactttaccgaaaaagtcaattccccgacttcttcatagaagc 50650609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31658794 - 31659012
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||||| |||  |||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||| | |||     
T  31658794 aaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaaag 31658893  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||| || |||| |||||||||||||||||| ||||| | || |||| ||| |||||||  |||||||||||||||||  | | |||    
T  31658894 aaacttgtctatggtgggacttatggagcaagtgatccatattagaatttat-cctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaa 31658992  T
Q  201 cgacttcaccgaagaagtca 220  Q
    ||||| ||||||||||||||    
T  31658993 cgactgcaccgaagaagtca 31659012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 244
Target Start/End: Complemental strand, 29833473 - 29833275
Alignment:
Q  46 ggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattat 145  Q
    ||||||||| |||| |||||| |||||  ||| |||||| |||||||| | || ||||  |||| | ||||||||||||| |||||||||||||||||||    
T  29833473 ggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtgatccatattat 29833374  T
Q  146 aatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||  || |||||||||||||  ||| ||||||||||||| |||||||||||||||||| ||||||||||||  | |||||| || |||||||    
T  29833373 aatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttcttcgtagaagc 29833275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 33216676 - 33216872
Alignment:
Q  48 tgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataa 147  Q
    ||||||| |||| ||||||  ||||  ||| |||||| |||||||| |||| ||||  |||| | ||||||||||||| |||||||||||||||||||||    
T  33216676 tgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataa 33216775  T
Q  148 tttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||   || |  ||||||||||  ||| ||||||||||||  |||||||||||||||||||||||||||||||    ||||||||| |||||||    
T  33216776 tttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtcattttaatgacttcatcgtagaagc 33216872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 53282237 - 53282152
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||| ||||||||||    
T  53282237 atctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagc 53282152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 39833366 - 39833448
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  39833366 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 39833448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 5232889 - 5232805
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||  ||| |||||||||||| ||||||| |||||||||||||||||||||||| || |||||| || |||||||    
T  5232889 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagc 5232805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 29703673 - 29703733
Alignment:
Q  163 gacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcattt 223  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29703673 gacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcattt 29703733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 39833205 - 39833307
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||| | | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  39833205 aaagaggagataaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 39833304  T
Q  101 aaa 103  Q
    |||    
T  39833305 aaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 36950291 - 36950376
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||  |||||||||| ||||| |||||||||||||||||||||| ||||| |||  | |||||| ||||||||||    
T  36950291 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagc 36950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 20104265 - 20104181
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||  ||| |||||||||||| | |||||||||| ||||||||| ||||||||| || |||||| || |||||||    
T  20104265 tctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagc 20104181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 5233044 - 5232946
Alignment:
Q  5 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    |||||||||| |||| | || ||||||| ||||||||| | | ||||||||||||||||| | | |||||||| |||||  |||||||| |||||||||    
T  5233044 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 20104420 - 20104322
Alignment:
Q  5 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    |||||||||| |||| | || ||||||| | ||||||| | | ||||||||||||||||| | | |||||||| |||||| |||||||| |||||||||    
T  20104420 aggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 36950181 - 36950234
Alignment:
Q  50 taccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  32 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  32 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1828655 - 1828412
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1828655 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 1828556  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1828555 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 1828456  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1828455 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 1828412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 40314120 - 40313877
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40314120 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 40314021  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40314020 aaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 40313921  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40313920 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 40313877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 41413417 - 41413660
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41413417 aaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaat 41413516  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41413517 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 41413616  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41413617 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 41413660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30625107 - 30624864
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||||||| ||  ||||||    
T  30625107 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaat 30625008  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||  | | |||    
T  30625007 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaa 30624908  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||  || |||||| || | ||||||| ||||||||||    
T  30624907 cgacttcactaaaaaagtcaatttctcgacttcttcatagaagc 30624864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 31482048 - 31482286
Alignment:
Q  6 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaact 105  Q
    ||||||||| ||| ||||| |  |||||| ||||||| | ||||||||| |||| |||||| |||||  ||| |||||| |||||||| |||| ||||      
T  31482048 ggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatc 31482147  T
Q  106 tgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgact 205  Q
    |||| | ||||||||||||| ||||||||||||||||||||||||||||  || ||||| |||||||  ||| |||| |||||||  |||||||||||||    
T  31482148 tgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgact 31482247  T
Q  206 tcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    | ||||||||||||||||  | |||||| || |||||||    
T  31482248 ttaccgaagaagtcattttactgacttcttcgtagaagc 31482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 24788459 - 24788541
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  24788459 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 24788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 39884639 - 39884575
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcattt 223  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39884639 atctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcattt 39884575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24788298 - 24788400
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| | ||||    
T  24788298 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 24788397  T
Q  101 aaa 103  Q
    |||    
T  24788398 aaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 39884749 - 39884696
Alignment:
Q  50 taccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  39884749 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27293189 - 27292946
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||| ||||||    
T  27293189 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaat 27293090  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||   | | |||    
T  27293089 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaa 27292990  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||    
T  27292989 cgacttcaccgaaaaagtcaattccccgacttcttcatagaagc 27292946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4919257 - 4919015
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| | ||| ||||||  ||||||||||||||||||| || ||||||||||||| |||||| |||||  ||| |||||| |||||||| ||||||    
T  4919257 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaat 4919158  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattgg-tccattcaa 199  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||  |    
T  4919157 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaatt--a 4919060  T
Q  200 acgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||| |||||| || ||||||||| ||||||||||    
T  4919059 acgacttcaccgaaaaagtcaattccccgacttcttcatagaagc 4919015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42976573 - 42976331
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||||| |||  | || ||||||||||||||||| | ||||||||||| ||||||||| |||||||||| ||||||||||||||| | |||     
T  42976573 aaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaaag 42976474  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||| || |||| |||||||||||||||||| ||||| |  | |||| |||||||||||  |||||||||||||||||  | | |||    
T  42976473 aaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaa 42976375  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||| || ||||||||||| ||  |||||||| ||||||||||    
T  42976374 cgactgcatcgaagaagtcaattgtccgacttcttcatagaagc 42976331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 24228273 - 24228361
Alignment:
Q  156 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24228273 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 24228361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 20133351 - 20133269
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  20133351 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 20133269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 55919539 - 55919604
Alignment:
Q  179 aaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  55919539 aaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 55919604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 45989586 - 45989676
Alignment:
Q  3 agaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||| ||||||| ||| ||||| ||||||||||||||||| | ||| ||||||||||||||||| ||||| |||| |||||||||||||||    
T  45989586 agagaagagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42069020 - 42069112
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||||||||| ||| ||| ||||| ||||||||||||||||| | ||| ||||||||||||||||| | ||| |||| |||||||||||||||    
T  42069020 aaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20133512 - 20133410
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||| | | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  20133512 aaagaggagataaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 20133413  T
Q  101 aaa 103  Q
    |||    
T  20133412 aaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55919361 - 55919463
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||  |||| ||| ||||||    
T  55919361 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaat 55919460  T
Q  101 aaa 103  Q
    |||    
T  55919461 aaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 42069168 - 42069252
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||  || || |||||||||||  |||||||||||||| ||||||||||||||||| || |||||| ||||||||||    
T  42069168 tctgacgtgtctaggattaaaatctgattgacccattcaaacgactgcaccgaagaagtcattttcctgacttcttcatagaagc 42069252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 47031581 - 47031665
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||  | || |||||||||||| |||||||||||||| ||||||||||||||||| || |||||| || |||||||    
T  47031581 tctgacgtgtcaatggttaaaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgacttcttcgtagaagc 47031665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 15531344 - 15531408
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcattt 223  Q
    ||||||||| ||||  ||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  15531344 atctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcattt 15531408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28679610 - 28679508
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||| ||||||||||||||||| | ||||||||  ||||  |||||||| | ||||    
T  28679610 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaat 28679511  T
Q  101 aaa 103  Q
    |||    
T  28679510 aaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 47031435 - 47031525
Alignment:
Q  3 agaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||| ||| ||| ||| ||||| ||||||||||||||||| | ||| ||||||||||||||||| | ||| |||| |||||| ||||||||    
T  47031435 agagaagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 45989751 - 45989816
Alignment:
Q  179 aaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||| |||||||||||||| |||| |||||||||||| || |||||| || |||||||    
T  45989751 aaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagc 45989816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  32 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27286407 - 27286164
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||  ||||||    
T  27286407 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 27286308  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||   | | |||    
T  27286307 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaa 27286208  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||||| || | ||||||| ||||||||||    
T  27286207 cgacttcaccgaaaaagtcaattcctcgacttcttcatagaagc 27286164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 52385788 - 52386031
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||   |||||||||||||||||| ||||||||||||||||||||||| | |||  ||| |||||||| |||||| ||||||    
T  52385788 aaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaat 52385887  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||||||||||||| || ||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||   | | |||    
T  52385888 aaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaa 52385987  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||||| || ||| ||||| ||||||||||    
T  52385988 cgacttcaccgaaaaagtcaatttcccaacttcttcatagaagc 52386031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 39241793 - 39241553
Alignment:
Q  6 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaact 105  Q
    ||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||||||| |||||    ||||| ||||||||||||||| |||||||||||    
T  39241793 ggagagagaattgtaattagaagaaaaatcatgtgtagatggtgtaccacaataacaaagacag---gtaaatctaaccgttaagatcatgaaataaact 39241697  T
Q  106 tgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattg-gtccattcaaacgac 204  Q
    |||| | |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||  ||| |||||||||||   |||||||||||||    
T  39241696 tgtctatggtggaacatatgaagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgac 39241598  T
Q  205 ttcaccgaagaagtcatttacccgacttcatcatagaagcaccaa 249  Q
    |||| |||||||||||||| ||  ||||| |||||||||| ||||    
T  39241597 ttcatcgaagaagtcattttcctaacttcttcatagaagctccaa 39241553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 12981462 - 12981380
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  12981462 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 12981380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12981623 - 12981521
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  12981623 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 12981524  T
Q  101 aaa 103  Q
    |||    
T  12981523 aaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45348242 - 45348344
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  45348242 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45348341  T
Q  101 aaa 103  Q
    |||    
T  45348342 aaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 45325611 - 45325701
Alignment:
Q  3 agaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||| ||||||| ||| |||||  |||||||||||||||| | ||| ||||||||||||||||| || || |||| |||||||||||||||    
T  45325611 agagaagagagaattgaaattaacagaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 45348403 - 45348485
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||    
T  45348403 tgacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctgacttcatcatagaagc 45348485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 45325749 - 45325822
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttc 233  Q
    |||||||||||  || || |||||||||||| |||||||||||||| ||| ||||||||||||| || ||||||    
T  45325749 tctgacgtgtctagggttaaaatctgattggcccattcaaacgactgcactgaagaagtcattttcctgacttc 45325822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12938885 - 12938643
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||  ||||||    
T  12938885 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaat 12938786  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||  | | |||    
T  12938785 aaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaa 12938686  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaag 243  Q
    |||||||||  || |||||| || | ||||||| |||||||||    
T  12938685 cgacttcactaaaaaagtcaatttctcgacttcttcatagaag 12938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33695023 - 33694805
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    ||||| ||||||||  ||||||||||||||||||||| |||| ||||||||||||||||| |||||  |||| |||| ||||| ||||||||| ||||||    
T  33695023 aaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaat 33694924  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||| ||||| | | ||||||||||| |||||||||||||||||| ||||| | |||  |||| |||||||||  ||| ||||||||||||||||||||||    
T  33694923 aaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatctgattggtccattcaaa 33694825  T
Q  201 cgacttcaccgaagaagtca 220  Q
    ||||||||||||| ||||||    
T  33694824 cgacttcaccgaaaaagtca 33694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 28138018 - 28138202
Alignment:
Q  5 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaac 104  Q
    ||||||| || |||| | || ||||||||||||||||| | |  |||||||||||| ||||| |||||||||| |||||| |||||||| ||||||||||    
T  28138018 aggagagcgaattggtactagaagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaac 28138117  T
Q  105 ttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattgg 190  Q
    ||||||| | ||| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||| |||||||| |||||||    
T  28138118 ttgtccatgatgggacatatggagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattgg 28138202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14096499 - 14096256
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| | ||| ||||||  ||||||||||||||||||| || ||||||||||||| |||||| |||||  ||| ||||| ||||||||| ||||||    
T  14096499 aaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaat 14096400  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||   | | |||    
T  14096399 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaa 14096300  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||    
T  14096299 cgacttcaccgaaaaagtcaattccccgacttcttcatagaagc 14096256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18977085 - 18977200
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||| | ||||||| | ||||||||||||||||||||| || ||||||| ||||| ||||||||| ||||||    
T  18977085 aaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaat 18977184  T
Q  101 aaacttgtccacggtg 116  Q
    ||||||||||| ||||    
T  18977185 aaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15330837 - 15330735
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  15330837 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 15330738  T
Q  101 aaa 103  Q
    |||    
T  15330737 aaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 17690545 - 17690463
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  17690545 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttcatcatagaagc 17690463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37261671 - 37261773
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  37261671 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 37261770  T
Q  101 aaa 103  Q
    |||    
T  37261771 aaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 16429805 - 16429724
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaag 243  Q
    |||||||||||   || |||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  16429805 tgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 37078890 - 37078806
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||  ||| |||||||||||| ||||||| |||||||||||||||||||||||| || |||||| || |||||||    
T  37078890 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagc 37078806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14810089 - 14810191
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | ||| |||| |||||| |||| ||| ||||||    
T  14810089 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaat 14810188  T
Q  101 aaa 103  Q
    |||    
T  14810189 aaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16429966 - 16429864
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||| ||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  16429966 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaat 16429867  T
Q  101 aaa 103  Q
    |||    
T  16429866 aaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17690706 - 17690604
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| | ||||    
T  17690706 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 17690607  T
Q  101 aaa 103  Q
    |||    
T  17690606 aaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 15330654 - 15330593
Alignment:
Q  183 ctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  15330654 ctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcataaaagc 15330593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 14810250 - 14810331
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||| |||| |||||||||||| || |||||||||||||||||    
T  14810250 tgacgtgtcatcatttaaaatctgattggcccattcaaacgact-caccaaagaagtcattttcctgacttcatcatagaagc 14810331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 7089168 - 7089083
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||  |||||||||| ||||| ||||||||||||||||| |||| ||||| |||  | |||||| ||||||||||    
T  7089168 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagc 7089083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 33755203 - 33755287
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaag 243  Q
    ||||||||||||||  |||||||||| ||||  |||||||||||||||||||||| ||||| |||  | |||||| |||||||||    
T  33755203 atctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 37079045 - 37078947
Alignment:
Q  5 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    |||||||||| |||| | || ||||||| ||||||||| | | ||||||||||||||||| | | |||||||| |||||  |||||||| |||||||||    
T  37079045 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 7089296 - 7089225
Alignment:
Q  32 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    |||||||||||||   | ||||||||||||||||| | |||||||| |||||| |||||||| |||||||||    
T  7089296 aatcatgtgtaaacaatataccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 18977216 - 18977303
Alignment:
Q  157 acatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||| |||||||||||  ||| ||||||||||||   | | ||||||||||| |||||||||||||| || |||||| ||||||||||    
T  18977216 acatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagc 18977303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33755093 - 33755146
Alignment:
Q  50 taccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||| | |||||||||| |||||| |||| ||| |||||||||    
T  33755093 taccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaa 33755146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19436915 - 19436672
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||  ||| ||||| ||||||||| ||||||    
T  19436915 aaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 19436816  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||   | | |||    
T  19436815 aaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaa 19436716  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||||  || ||| ||||| ||||| ||||    
T  19436715 cgacttcaccgaaaaagtctattccccaacttcttcataaaagc 19436672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29833919 - 29834162
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||| ||||| ||||||  ||||| ||||||||||| | ||||| ||||||||||||||||| |||||  ||| ||||| ||||||||| ||||||    
T  29833919 aaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaat 29834018  T
Q  101 aaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaa 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||   | | |||    
T  29834019 aaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaa 29834118  T
Q  201 cgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||| ||| || |||||| || ||||||||| || |||||||    
T  29834119 cgactttaccaaaaaagtcaattccccgacttcttcgtagaagc 29834162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 29258562 - 29258387
Alignment:
Q  69 ccaagtaaacctaaccgttaa-gatcctgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgt 167  Q
    ||||||||| ||||||||||| |||  ||||||||||||||||||||||||||| ||| |||||||||||||| ||| ||||||||| |  |||||||||    
T  29258562 ccaagtaaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtcc-attatctgacgt 29258464  T
Q  168 gtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||  |||||||||||||||| |||||||||| ||| || ||||||||||| || ||||||||| ||||||||||    
T  29258463 gtcatcacttgaaatctgattggcccattcaaacaactgcatcgaagaagtcaattgcccgacttcttcatagaagc 29258387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 45972364 - 45972282
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  45972364 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 45972282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 29243323 - 29243239
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||   || |||||||||||  |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  29243323 tctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 29243239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 47327885 - 47327801
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||| || |||||| || |||||||    
T  47327885 tctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagc 47327801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45972525 - 45972423
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| ||||||    
T  45972525 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaat 45972426  T
Q  101 aaa 103  Q
    |||    
T  45972425 aaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 6442726 - 6442636
Alignment:
Q  3 agaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||| ||||||| ||| ||||| ||||||||||||||||| | ||| ||||||||||||||||| ||||| |||| ||||| |||||||||    
T  6442726 agagaagagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 34094061 - 34093977
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||  || || |||||||||||| |||||||||||||| |||||||||||||||||  | |||||| || |||||||    
T  34094061 tctgacgtgtctaggattaaaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttcttcgtagaagc 34093977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34094190 - 34094118
Alignment:
Q  20 aattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagat 92  Q
    ||||| ||||||||||||||||| | ||| ||||||||||||||||| | ||| |||| ||||||||||||||    
T  34094190 aattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  26 aagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||||| | ||||||||||||||  ||||| | |||||||| |||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 47328040 - 47327942
Alignment:
Q  5 aggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    |||||||||| |||| | || ||||||| ||||||||| | | ||||||||||||||||| | | |||||||| |||||  |||||||| |||||||||    
T  47328040 aggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 6442561 - 6442496
Alignment:
Q  179 aaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||| |||||||||||||| |||| |||||||||||| || |||||| || |||||||    
T  6442561 aaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagc 6442496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 13802659 - 13802897
Alignment:
Q  6 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaact 105  Q
    ||||||||| ||| ||||| |  |||||| ||||||| | ||||||||| ||||  ||||| |||||  ||| |||||| |||||||| | || ||||      
T  13802659 ggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatc 13802758  T
Q  106 tgtccacggtggaacatatgaagcaagtgatccatattataatttgtcccaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgact 205  Q
    |||| | ||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||  ||| ||||||||||||| |||||||||||||    
T  13802759 tgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgact 13802858  T
Q  206 tcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    | |||||| |||||||||  | |||||| || |||||||    
T  13802859 ttaccgaaaaagtcattttactgacttcttcgtagaagc 13802897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 531625 - 531543
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  531625 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 531543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 531786 - 531684
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||  ||||||    
T  531786 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaat 531687  T
Q  101 aaa 103  Q
    |||    
T  531686 aaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  29 aaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcct-gaaataaacttgtccacggtggaacatatgaa 127  Q
    |||||||||||||| ||| |||||||||||| ||| || |||||  ||| ||||||||||||||| |  ||| ||| || |||| ||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  128 gcaagtgatccatattataatttgtc 153  Q
    ||||||| ||||||||| ||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 30945584 - 30945671
Alignment:
Q  160 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcacc---gaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||||   || |||||||||||  |||||||||||||||||||   ||||||||||||| || |||||||||||||||||    
T  30945584 tctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagaagtcattttcctgacttcatcatagaagc 30945671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  26 aagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||||| | ||||||||||||||  ||||| | |||||||| |||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 3879490 - 3879543
Alignment:
Q  50 taccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaataaa 103  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 3879600 - 3879685
Alignment:
Q  159 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    ||||||||||||||  |||||||||| |||||  ||||||||||||||||||||| ||||| |||  | |||||| || |||||||    
T  3879600 atctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagc 3879685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 23614338 - 23614274
Alignment:
Q  29 aaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatc 93  Q
    |||||||||||||| ||||||| ||||||||  || || |||||  ||| |||||||||||||||    
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatc 23614274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 30842 - 30924
Alignment:
Q  162 tgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagc 244  Q
    |||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  30842 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagc 30924  T

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Target: scaffold0166; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30681 - 30783
Alignment:
Q  1 aaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcctgaaat 100  Q
    |||||||||||| | |||| | || ||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||| |||| ||| | ||||    
T  30681 aaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaat 30780  T
Q  101 aaa 103  Q
    |||    
T  30781 aaa 30783  T

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