View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_94 (Length: 239)
Name: NF21120_high_94
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_94 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 55506795 - 55506982
Alignment:
| Q |
1 |
ccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctact---ctatgtatacgaccaacgcnnnnnnnnnnnnnnnn-gc |
96 |
Q |
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| T |
55506795 |
ccaattcttatatttagaaaaaacaaaaattaaaacaacatgtctcgtgtttacctactactctatgtatccgaccaacgctttttgttttattttttgc |
55506894 |
T |
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| Q |
97 |
atgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttgaaggcaatacaaagaaacgaggatcatgtttctctcaaat |
184 |
Q |
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| T |
55506895 |
atgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttgaaggcaatacaaagaaacgaggatcatgtttctctcaaat |
55506982 |
T |
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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 43633245 - 43633045
Alignment:
| Q |
10 |
atatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaacgcnnnnnnnnnnnnnnnn-gcatgtttgttggt |
108 |
Q |
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| T |
43633245 |
atatttataaaaggtaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaacgcttttgttttatttttttgcatgtttattggt |
43633146 |
T |
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| Q |
109 |
tagtaaa--gtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaagaaacgaggatcatgtttctctcaaattagctaagtaatcataatc |
203 |
Q |
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| T |
43633145 |
tagtaaaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaaagaaacgacgatcatgtttctctcaaattagctaagtaatcataatc |
43633046 |
T |
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| Q |
204 |
a |
204 |
Q |
| |
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| |
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| T |
43633045 |
a |
43633045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 43996927 - 43997128
Alignment:
| Q |
1 |
ccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgacca--acgcnnnnnnnnnnnnnnnngcat |
98 |
Q |
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|||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| || |||| |
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| T |
43996927 |
ccaattcttatatttataaaaggcaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaatactattgttttattttttttgcat |
43997026 |
T |
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| Q |
99 |
gtttgttggttagtaaagtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaagaaacgaggatcatgtttctctcaaattagctaagtaa |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
43997027 |
gtttattggttagtaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaa-------acgatcatgtttctctcaaattagctaagtaa |
43997119 |
T |
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| Q |
196 |
tcataatca |
204 |
Q |
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||||||||| |
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| T |
43997120 |
tcataatca |
43997128 |
T |
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