View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_95 (Length: 238)
Name: NF21120_high_95
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_95 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 55506667 - 55506458
Alignment:
| Q |
1 |
tacaactacgtttagtaccccttagccgccattctagagatattatgaaaataaagcgaatgatagaaagacggcgatagaccaaaacgaacgaagcgaa |
100 |
Q |
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| T |
55506667 |
tacaactacgtt-agtaccccttagccgccattctagagatattatgaaaataaagagaaagatagaaagac--------acttgtgcgaacgaagcgaa |
55506577 |
T |
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| Q |
101 |
ctcaacatttgcatcaataagaccttgtcaggaaaatccagggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaa |
200 |
Q |
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| T |
55506576 |
ctcaacatttgcatcaataagaccttgtcaggaaaatccagggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaa |
55506477 |
T |
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| Q |
201 |
atttaggaattgttgttcg |
219 |
Q |
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||||||||||||||||||| |
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| T |
55506476 |
atttaggaattgttgttcg |
55506458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 43996561 - 43996514
Alignment:
| Q |
90 |
aacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaat |
137 |
Q |
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||||||| |||||||||||| ||||||||||||||||| |||||||| |
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| T |
43996561 |
aacgaagagaactcaacattcacatcaataagaccttgtgaggaaaat |
43996514 |
T |
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