View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_high_97 (Length: 237)
Name: NF21120_high_97
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 20529339 - 20529556
Alignment:
| Q |
1 |
cagacgttaaacaaacaaagaaacttttagcggcaccccttttagagttcttgaatttcagaaccacgtgtcaggcatttgtcttactaatacttgcaca |
100 |
Q |
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| T |
20529339 |
cagacgttaaacaaacaaagaaacttttagcggcaccccttttagagttcttgaatttcagaaccacgtgtcaagcatttgtcttactaatacttgcaca |
20529438 |
T |
|
| Q |
101 |
agtcttcgtacaaaagnnnnnnnnnnnacttaaacaatgtctcaggttcaaacttacatactcgcatattaaatatcaaggtagcatatgaaatgtacct |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20529439 |
agtcttcgtacaaaag--tttttttttacttaaacaatgtctcaggttcaaacttacatactcgcatattaaatatcaaggtagcatatgaaatgtacct |
20529536 |
T |
|
| Q |
201 |
accaaaacagaagtgcaaca |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
20529537 |
accaaaacagaagtgcaaca |
20529556 |
T |
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