View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_100 (Length: 236)
Name: NF21120_low_100
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 29482263 - 29482054
Alignment:
| Q |
12 |
aaaagtaaaggccactaacaattagtaaggccagcctgataacaagtactaatttcatccactaatcctctaattagagttttctagatcaaccaaatga |
111 |
Q |
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| T |
29482263 |
aaaagtaaaggccactagcaattagtacggccagcctaataacaagtactaatttcatccactaatcctctaatgagagttttctagatcaaccaaatga |
29482164 |
T |
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| Q |
112 |
attgaaattgacaaaaattgtatgagtgccaacattatgacgtacatataaattattcgattacaagtaacatacaattatgtttttaatttaattgtta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29482163 |
attgaaattgacaaaaattgtatgagtgccaacattatgacgtacatataaattattcaattacaagtaacatacaattatgtttttaacttaattgtta |
29482064 |
T |
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| Q |
212 |
tacttagatg |
221 |
Q |
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|||||||||| |
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| T |
29482063 |
tacttagatg |
29482054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 30258280 - 30258455
Alignment:
| Q |
37 |
taaggccagcctgataacaagtactaatttcatccactaatcctctaattagagttttctagatcaaccaaatgaattgaaattgacaaaaattgtatga |
136 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30258280 |
taaggccagcctaataacaagtactaatttcatccactaat---------agagttttctagatcaaccaaatgaattgaaattgacaaaaattgtatga |
30258370 |
T |
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| Q |
137 |
gtgccaacattatgacgtacatataaattattcgattacaagtaacatacaattatgtttttaatttaattgttatacttagatg |
221 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30258371 |
gtgccaacattatgacgtacatgtaaattattcgattacaagtaacatacaattatgtttttaatttaattgttatacttagatg |
30258455 |
T |
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