View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_101 (Length: 236)
Name: NF21120_low_101
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_101 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6558045 - 6557825
Alignment:
| Q |
1 |
catctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatca |
100 |
Q |
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| T |
6558045 |
catctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatca |
6557946 |
T |
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| Q |
101 |
aaattgcatgaagtatggtaggccagattctgagttcatgaagtggagatggaagccaaatgagtgtgaattaccaatttttaatccttttcaatttctt |
200 |
Q |
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| T |
6557945 |
aaattgcatgaaatatggtaggccagattctgagtttatgaagtggagatggaagccaaatgagtgtgaactaccaattttcaatccttttcaatttctt |
6557846 |
T |
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| Q |
201 |
gaaattgttagaggaaaatct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6557845 |
gaaattgttagaggaaaatct |
6557825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 6368747 - 6368535
Alignment:
| Q |
9 |
aaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatcaaaattgca |
108 |
Q |
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| T |
6368747 |
aaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaattcatgaagaccaaaattgta |
6368648 |
T |
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| Q |
109 |
tgaagtatggtaggccagattctgagttcatgaagtggagatggaagccaaatgagtgtgaattaccaatttttaatccttttcaatttcttgaaattgt |
208 |
Q |
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| T |
6368647 |
tgaagtatggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgagcttcctatattcaatccttttcaatttcttgaaattgt |
6368548 |
T |
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| Q |
209 |
tagaggaaaatct |
221 |
Q |
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| T |
6368547 |
gaggggaaaatct |
6368535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 6377212 - 6377000
Alignment:
| Q |
9 |
aaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatcaaaattgca |
108 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| | |||||||| | |
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| T |
6377212 |
aaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaattcatgaagaccaaaattgta |
6377113 |
T |
|
| Q |
109 |
tgaagtatggtaggccagattctgagttcatgaagtggagatggaagccaaatgagtgtgaattaccaatttttaatccttttcaatttcttgaaattgt |
208 |
Q |
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| T |
6377112 |
tgaagtatggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgagcttcctatattcaatccttttcagtttcttgaaattgt |
6377013 |
T |
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| Q |
209 |
tagaggaaaatct |
221 |
Q |
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|| ||||||||| |
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| T |
6377012 |
gaggggaaaatct |
6377000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 183 - 59
Alignment:
| Q |
9 |
aaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatcaaaattgca |
108 |
Q |
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||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| | |
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| T |
183 |
aaaaagtgtgacattttcacaggtgagtgggttccaaatccaaaaggaccatattacacaaataaaacatgttgggcaattcatgaacaccaaaattgta |
84 |
T |
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| Q |
109 |
tgaagtatggtaggccagattctga |
133 |
Q |
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| T |
83 |
tgaagtatggaagaccagattctga |
59 |
T |
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