View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_103 (Length: 227)
Name: NF21120_low_103
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 645362 - 645569
Alignment:
| Q |
1 |
ggtgatggagaagaactgtttggaaacaagggagagagacttgaggtaacgatgattgtgatccttgtctccgttgtcgttgatgaggaatctgaagaca |
100 |
Q |
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| T |
645362 |
ggtgatggagaagaactgtttggaaacaagggagagagacttgaggtaacgatgattgtgatccttgtctctgttgtcgttgatgaggaatctgaagaca |
645461 |
T |
|
| Q |
101 |
catacccaacaatcataaggtaaataaaaatctgcagctgctgttttgcatgttgttatagaagaaaccatcgattcttgttgctgattggactatgaca |
200 |
Q |
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| T |
645462 |
catacccaacaatcataaggtaaataaaaatctgcagctgctgttttgcatgttgttatagaagaaaccatcgattgttgttgctgattggactatgaca |
645561 |
T |
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| Q |
201 |
gccgccgg |
208 |
Q |
| |
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|||||||| |
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| T |
645562 |
gccgccgg |
645569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 1537299 - 1537243
Alignment:
| Q |
78 |
cgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg |
134 |
Q |
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| T |
1537299 |
cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaatataaatctg |
1537243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 559010 - 559047
Alignment:
| Q |
2 |
gtgatggagaagaactgtttggaaacaagggagagaga |
39 |
Q |
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| T |
559010 |
gtgatggagaagaactgttttgagacaagggagagaga |
559047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 15091337 - 15091276
Alignment:
| Q |
73 |
gttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg |
134 |
Q |
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| T |
15091337 |
gttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaatagaaatctg |
15091276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 9582019 - 9582081
Alignment:
| Q |
72 |
cgttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg |
134 |
Q |
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| T |
9582019 |
cgttgtcgtcaatgaggaatttgaagacggattcccaacagtcattaggtaaataaaaatctg |
9582081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 37579581 - 37579545
Alignment:
| Q |
2 |
gtgatggagaagaactgtttggaaacaagggagagag |
38 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |
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| T |
37579581 |
gtgatggagaggaactgtttggaaacaagggatagag |
37579545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 51120372 - 51120316
Alignment:
| Q |
84 |
tgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctgcagctg |
140 |
Q |
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|||||||| ||||||||||| ||||||| |||| ||||||||| |||| ||| |||| |
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| T |
51120372 |
tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaatatgctgctg |
51120316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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