View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_16 (Length: 560)
Name: NF21120_low_16
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 144 - 342
Target Start/End: Complemental strand, 44135702 - 44135504
Alignment:
| Q |
144 |
ccccttccgtctcctccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaatggtgggtannnnnnnnnnnnnnnata |
243 |
Q |
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| T |
44135702 |
ccccttccgtctcctccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaatggtgggtatgtgtgtgtgtgtatata |
44135603 |
T |
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| Q |
244 |
tatatattgcttgaacattaaagnnnnnnnnggacataagtgatttaccgaaaaataaactatttagggacattttcttttgtaggactaaattatctc |
342 |
Q |
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| T |
44135602 |
tatatattgcttgaacattaaagaaaaaaaaggacataagtgatttactgaaaaataaactatttagggacattttcttttgtaggactaaattatctc |
44135504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 340 - 440
Target Start/End: Complemental strand, 44134807 - 44134707
Alignment:
| Q |
340 |
ctcgaagccaaatgagatggttacatggagcctagaggttgtccgtatctgatacaggcacatctcgatgcttggagtatcctgcaagcttcaattcatc |
439 |
Q |
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| T |
44134807 |
ctcgaagccaaatgagatggttacatggagcctagaggttgtcggcatccgatacaggtacatctcgatgcttggagtatcctgcaagcttcaattcatc |
44134708 |
T |
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| Q |
440 |
t |
440 |
Q |
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| T |
44134707 |
t |
44134707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44135844 - 44135760
Alignment:
| Q |
1 |
cttgtgcagggaaagggtgttcttctgcctatatattccataccctccagtcttactagggtagttttaacaaattttgctaatt |
85 |
Q |
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| T |
44135844 |
cttgtgcagggaaagggtgttcttctgcctatatattccataccctccagtcttgctagggtagttttaacaaattttgctaatt |
44135760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 342
Target Start/End: Original strand, 16456047 - 16456237
Alignment:
| Q |
144 |
ccccttccgtctcctccaaaatcctccatcaaaacataccataaaattcatgttaggtagttcatagttacaa---tggtgggtannnnnnnnnnnnnnn |
240 |
Q |
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|||||||| ||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| ||||| ||| |
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| T |
16456047 |
ccccttccttcttctccaaaatcctccatccaaacataccataaaatttatgtcacgtagttcatagttacaacaatggtgtgtatttgtg--------- |
16456137 |
T |
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| Q |
241 |
atatatatattgcttgaacattaaagnnnnnnnnggacataagtgatttaccgaaaaataaactatttagggacattttcttttgtaggactaaattatc |
340 |
Q |
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| T |
16456138 |
-tatatatattgtttgaacattaaagaagaaaa-ggacataagtgatttattgaaaaataaactatttagggtcattttcttttgtacgactaaattatc |
16456235 |
T |
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