View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_low_2 (Length: 853)
Name: NF21120_low_2
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_2 |
 | |
|
| [»] scaffold0017 (3 HSPs) |
| | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 44615112 - 44614765
Alignment:
| Q |
6 |
agtagcaaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattac |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615112 |
agtaacaaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattac |
44615013 |
T |
|
| Q |
106 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615012 |
attattaaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
44614913 |
T |
|
| Q |
206 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctatt |
305 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44614912 |
tccatacaaaaactctcaaaattgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctatt |
44614813 |
T |
|
| Q |
306 |
cctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
353 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44614812 |
cctacccataaccaaacagtcaagggtgtgaactccacactgctaacc |
44614765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 473 - 837
Target Start/End: Complemental strand, 44614721 - 44614357
Alignment:
| Q |
473 |
attaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaataatag |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44614721 |
attaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatag |
44614622 |
T |
|
| Q |
573 |
aaatgctttagttacacatatatcaacaaagaaagatatttttaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaaca |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614621 |
aaatgctttagttacacatatatcaacaaagaaagatattttcaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaaca |
44614522 |
T |
|
| Q |
673 |
taagtatacctgccaggtagaattactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtag |
772 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
44614521 |
taagtatacctgccaggtagaattactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtag |
44614422 |
T |
|
| Q |
773 |
tnnnnnnnttgagcctaccaagccaacgaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
44614421 |
taacaacattgagccgaccaagccaacgaaaccagtgaagaatcctatccccatgctcatgtata |
44614357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 44793457 - 44793804
Alignment:
| Q |
6 |
agtagcaaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattac |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44793457 |
agtaacaaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgactcttaaaattctttgttatgtttggaggatttattac |
44793556 |
T |
|
| Q |
106 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44793557 |
attattaaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
44793656 |
T |
|
| Q |
206 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctatt |
305 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44793657 |
tccatacaaaaactctcaaaattgaaattgaaagccaaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctatt |
44793756 |
T |
|
| Q |
306 |
cctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
353 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44793757 |
cctacccataaccaaacagtcaagggtgtgaactccacactgctaacc |
44793804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 473 - 678
Target Start/End: Original strand, 44793848 - 44794053
Alignment:
| Q |
473 |
attaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaataatag |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44793848 |
attaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatag |
44793947 |
T |
|
| Q |
573 |
aaatgctttagttacacatatatcaacaaagaaagatatttttaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaaca |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
44793948 |
aaatgctttagttacacatatatcaacaaagaaagatattttcaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaagaaata |
44794047 |
T |
|
| Q |
673 |
taagta |
678 |
Q |
| |
|
|||||| |
|
|
| T |
44794048 |
taagta |
44794053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 164 - 353
Target Start/End: Original strand, 44789760 - 44789949
Alignment:
| Q |
164 |
aaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
263 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
44789760 |
aaaaatccatttattacattaatcactcgatagcagaagattttcatacaaaaactgtcaaacttgaaattgaaagccaaacaaaacacaatcaaacact |
44789859 |
T |
|
| Q |
264 |
aaagttttaacaaaaactgttatttattgatcctttgctattcctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44789860 |
aaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaacagtcaagggtgtgaactccacactgctaacc |
44789949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 685 - 837
Target Start/End: Original strand, 17809928 - 17810080
Alignment:
| Q |
685 |
ccaggtagaattactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttga |
784 |
Q |
| |
|
||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
17809928 |
ccaggtagattcactgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattga |
17810027 |
T |
|
| Q |
785 |
gcctaccaagccaacgaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
17810028 |
gcctaccaagccaacgaaaccagtaaagaacccaagccccatgctcatgtata |
17810080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 44146980 - 44146823
Alignment:
| Q |
106 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
205 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| |||| ||| |||||||||| |
|
|
| T |
44146980 |
attattaactcgataacagaagccataacaaaacacagtcaagcactaaaattttaacaaaactccatctattacattattaactcgatggcagaagatt |
44146881 |
T |
|
| Q |
206 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
263 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
44146880 |
tccatacaaaaactgtcaaccttgaaattgaaagcagaaaaaaacacaatcaaacact |
44146823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 44783372 - 44783517
Alignment:
| Q |
118 |
atagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
44783372 |
atagcagaagccataacaaaacctagtcacacactaaagttttaacagaagtccatttattacattattaactcgatagcagaagatttcaatacaaaaa |
44783471 |
T |
|
| Q |
218 |
ctctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
263 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
44783472 |
tcaccaaacttgaaattgaaagtagaaaaaaacacaatcaaacact |
44783517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 44789646 - 44789743
Alignment:
| Q |
80 |
tttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttatta |
179 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44789646 |
tttgttatgtttggaggatgtattacattattaaattga-agcagaagccataa--aagcacagtcacacactaaagttttaacaaaattccatttatta |
44789742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 694 - 837
Target Start/End: Original strand, 44783964 - 44784107
Alignment:
| Q |
694 |
attactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaa |
793 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| ||||| ||||||||| ||||||| |||||||||||||| |||||| ||||||||| || |
|
|
| T |
44783964 |
attactgcttccaccagatgatgattctcaatattaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaa |
44784063 |
T |
|
| Q |
794 |
gccaacgaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
|||||||||| ||| |||||||| | ||||||||||||||||| |
|
|
| T |
44784064 |
accaacgaaactagtaaagaatcctatccccatgctcatgtata |
44784107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 695 - 817
Target Start/End: Complemental strand, 35900934 - 35900812
Alignment:
| Q |
695 |
ttactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaag |
794 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||| |||||||||||| ||||| | |||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
35900934 |
ttactgcttcctccacaagaagattttcaatatcaatgtgttcaagaatttggagcaagtttctctccaagatggtagtaaaaatattgagcctgccaag |
35900835 |
T |
|
| Q |
795 |
ccaacgaaaccagtgaagaatcc |
817 |
Q |
| |
|
|||||||| ||| |||||||||| |
|
|
| T |
35900834 |
ccaacgaagccaatgaagaatcc |
35900812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 443 - 502
Target Start/End: Original strand, 44783642 - 44783701
Alignment:
| Q |
443 |
taatttaatcatgacttgtgatatgtacatattaacttaactatgaaaacaacaatgata |
502 |
Q |
| |
|
||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
44783642 |
taatttaatcaagacatgtgatatgtataaattaacttaactatgaaaacaacaatgata |
44783701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 11542486 - 11542579
Alignment:
| Q |
497 |
atgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaataatagaaatgctttagttacaca |
590 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||| | ||||||| || ||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
11542486 |
atgatataggttatgggattgatattgtctttgatgacatgttattgatcactgagaaatgcaatacaaattgttgaagtgctttagttacaca |
11542579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 354 - 600
Target Start/End: Original strand, 29505387 - 29505639
Alignment:
| Q |
354 |
gatcctgcaaaaataagaattagttttagtatttggaaagatcaccaaatcagtgcagttttagtacatgaaaaaaccttacaaacaagtaa-------t |
446 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||| ||| ||||||||||| |||||||||| |||||||| | | | |||||||| | |
|
|
| T |
29505387 |
gatcctgcaaaaataagaattaattttagtacttgaaaatgtcataaaatcagtgcaattttagtacaagaaaaaacataa-acacaagtaactaatcat |
29505485 |
T |
|
| Q |
447 |
ttaatcatgacttgtgatatgtacatattaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaac |
546 |
Q |
| |
|
|| |||| ||| ||||||||||| | |||||||| ||||||||||| || ||||| |||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
29505486 |
ttgatcaggacatgtgatatgtatagattaacttgactatgaaaactacgatgatgtatattatgagattgatactgtctttgatgacagattattgaac |
29505585 |
T |
|
| Q |
547 |
agtgagaaatgcaatacaaataatagaaatgctttagttacacatatatcaaca |
600 |
Q |
| |
|
| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
29505586 |
attgagaaatgcaatacaaattgtagaaaatgtttagttacacatatatcaaca |
29505639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 29505175 - 29505328
Alignment:
| Q |
197 |
cagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcc |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||| ||| ||||||| |||| |
|
|
| T |
29505175 |
cagaagatttccatacaaaaactgtcaaacttgaaattgaaagcctaacaaa-cacaataaaacactaaagtcttaacaaaa--tgtcatttattcatcc |
29505271 |
T |
|
| Q |
297 |
tttgctattcctacccataaccagacagtcaagggtgtgaactccacactgctaacc |
353 |
Q |
| |
|
||| |||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
29505272 |
tttcctattcctactcttaaccaaacagtcaagagtgtgaactccacactgctaacc |
29505328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 697 - 837
Target Start/End: Original strand, 29505800 - 29505940
Alignment:
| Q |
697 |
actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaagcc |
796 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||| |||| || |||||||||||||| ||||| |||| |||| ||||| |
|
|
| T |
29505800 |
actgcttccaccacatgaacactttcaatatcaaagcattcaagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagcc |
29505899 |
T |
|
| Q |
797 |
aacgaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
||| ||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
29505900 |
aacaaaagtagtgaagaatcctagccccatgctcatgtata |
29505940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 700 - 837
Target Start/End: Complemental strand, 182450 - 182313
Alignment:
| Q |
700 |
gcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaagccaac |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
182450 |
gcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcctaccaagccaat |
182351 |
T |
|
| Q |
800 |
gaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
182350 |
gaaaccagtgaagaatcctatccccatgctcatatata |
182313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 500 - 600
Target Start/End: Complemental strand, 171625 - 171525
Alignment:
| Q |
500 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaataatagaaatgctttagttacacatatatcaac |
599 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
171625 |
atatatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaac |
171526 |
T |
|
| Q |
600 |
a |
600 |
Q |
| |
|
| |
|
|
| T |
171525 |
a |
171525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 701 - 837
Target Start/End: Complemental strand, 171362 - 171226
Alignment:
| Q |
701 |
cttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaagccaacg |
800 |
Q |
| |
|
|||||||||||||| | | |||||| ||||| ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
171362 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
171263 |
T |
|
| Q |
801 |
aaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
171262 |
aaaccagtgaagaatcctatccccatgctcatatata |
171226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 697 - 837
Target Start/End: Complemental strand, 26730111 - 26729971
Alignment:
| Q |
697 |
actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaagcc |
796 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||| |||||||||||||||||||| |||||||||||||||| || | |||||||||||||||| |
|
|
| T |
26730111 |
actgcttccaccacatgaaggctttcaagatcaaggtgttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctaccaagcc |
26730012 |
T |
|
| Q |
797 |
aacgaaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
26730011 |
aacgaaactagtgaagaatcctatccccatgctcatgtata |
26729971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 500 - 600
Target Start/End: Original strand, 27167 - 27267
Alignment:
| Q |
500 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaataatagaaatgctttagttacacatatatcaac |
599 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
27167 |
atatatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaac |
27266 |
T |
|
| Q |
600 |
a |
600 |
Q |
| |
|
| |
|
|
| T |
27267 |
a |
27267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 701 - 837
Target Start/End: Original strand, 27430 - 27566
Alignment:
| Q |
701 |
cttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagtnnnnnnnttgagcctaccaagccaacg |
800 |
Q |
| |
|
|||||||||||||| | | |||||| ||||| ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
27430 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
27529 |
T |
|
| Q |
801 |
aaaccagtgaagaatccaaaccccatgctcatgtata |
837 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
27530 |
aaaccagtgaagaatcctatccccatgctcatatata |
27566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 29227238 - 29227288
Alignment:
| Q |
785 |
gcctaccaagccaacgaaaccagtgaagaatccaaaccccatgctcatgta |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
29227238 |
gcctaccaagccaacgaaaccagtgaagaatcctagccccatgctcatgta |
29227288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 29340537 - 29340587
Alignment:
| Q |
785 |
gcctaccaagccaacgaaaccagtgaagaatccaaaccccatgctcatgta |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
29340537 |
gcctaccaagccaacgaaaccagtgaagaatcctagccccatgctcatgta |
29340587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 773
Target Start/End: Original strand, 29218246 - 29218322
Alignment:
| Q |
697 |
actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagt |
773 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| | | ||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
29218246 |
actgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagt |
29218322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 773
Target Start/End: Original strand, 29331545 - 29331621
Alignment:
| Q |
697 |
actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtacgtttctctccaagacggtagt |
773 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| | | ||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
29331545 |
actgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagt |
29331621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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