View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_low_21 (Length: 543)
Name: NF21120_low_21
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 68 - 398
Target Start/End: Complemental strand, 34704497 - 34704154
Alignment:
| Q |
68 |
cagtcaagcaatggaatgagagcatggtttctaggttgcgtctagacattgaaaaatcgaaata--------------tgaaggaggcagaaggattttt |
153 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||| |||| ||||||| ||||||||| |
|
|
| T |
34704497 |
cagtcaagcaatggaatgagagcatgatttctaggttgcgtccagacattggaatatcgaaatagaaaggagggaatttgaatgaggcaggaggattttt |
34704398 |
T |
|
| Q |
154 |
gaatgagaatagacatggtgtgtattgttagttatatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgga |
253 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34704397 |
gaatgagaataaacatggtgtgtat-gttagttatatatag--ttcataactgaaggaataagagatgtgttggaaacagaaacaacatggagaagtgga |
34704301 |
T |
|
| Q |
254 |
tagctgatttattgtgcat-gggtatggcaaaggtcgaattaaatagcacacatatgaatacatgcatctcacgttt-tatattagaaggccgaaaatca |
351 |
Q |
| |
|
|||| |||||| || || ||||||||||||||| || |||||||||||||| | ||||||||||||||||||||| | || ||||||||||| ||| |
|
|
| T |
34704300 |
tagccgatttacaatgtatggggtatggcaaaggttgagttaaatagcacacaaaagaatacatgcatctcacgtttattgtttggaaggccgaaattca |
34704201 |
T |
|
| Q |
352 |
ggaagtcacaacaataagcaatttaaatttcaactgggtggagggaa |
398 |
Q |
| |
|
|||||||| |||||||||| | || |||||||||| |||||||||| |
|
|
| T |
34704200 |
ggaagtcaaaacaataagctacttgaatttcaactaagtggagggaa |
34704154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 16965582 - 16965457
Alignment:
| Q |
401 |
ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattggaaaatcaaaatgggaaaggaaagaggagttttggacgtggaatt |
500 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
16965582 |
ataccagtcaagcagtggaatgtcatcaagagttcaacagtgtgtccagccattggaaaattgaaatgggaaaggaaagaggagttttggacgagtaata |
16965483 |
T |
|
| Q |
501 |
gcatttatgtactctagtgtatatat |
526 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
16965482 |
gcatttctgtactctagtgtatatat |
16965457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 16965463 - 16965399
Alignment:
| Q |
188 |
tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgg |
252 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16965463 |
tatatatagttcataactgaatgtataagggatgtgttggaaacagaaacaacatggagaagtgg |
16965399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 16036460 - 16036351
Alignment:
| Q |
213 |
taagagatgtgttggaaacagaaaaagcatggagaagtggatagctgatttattgtgcat-gggtatggcaaaggtcgaattaaatagcacacatatgaa |
311 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||| || |||| |
|
|
| T |
16036460 |
taagggatgtgttggaaatagaaacaatatggagaagtggatagctaatttattttgcatggggtatggcaaaggtctgattaaatagcagccaaatgag |
16036361 |
T |
|
| Q |
312 |
tacatgcatc |
321 |
Q |
| |
|
|||||||||| |
|
|
| T |
16036360 |
tacatgcatc |
16036351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 38506269 - 38506185
Alignment:
| Q |
188 |
tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtggatagctgatttattgtgcat |
272 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||| ||||||||||||| | |||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
38506269 |
tatatatagttcataattgaaggtataagggatgtattggaaacagaaacaatatggagaagtgggtagcttattaattctgcat |
38506185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 12826049 - 12826103
Alignment:
| Q |
401 |
ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattg |
455 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
12826049 |
ataccagtcaagttttggattgccatcaagagttcaacgctgtgtccagccattg |
12826103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 12821381 - 12821445
Alignment:
| Q |
188 |
tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgg |
252 |
Q |
| |
|
|||||||||| ||||| |||||| |||| ||||||||||||||| ||| | |||||||||||| |
|
|
| T |
12821381 |
tatatataatgcataattgaaggcataaaggatgtgttggaaacaaaaataatatggagaagtgg |
12821445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University