View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_23 (Length: 524)
Name: NF21120_low_23
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 19607395 - 19607106
Alignment:
| Q |
32 |
tggaataatatctaagtcatcaaaacctgcatcctctttacaagtctgaataatcggtattgcttctccattcaacactgagacaatcacacctttccga |
131 |
Q |
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| T |
19607395 |
tggaataatatctaagtcatcaaaacccgcatcctctatacgagtttgaataaccggtattgcttctccgttcaacactgagacaatcacacctttccga |
19607296 |
T |
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| Q |
132 |
gcccaatctaaatcatgaggaactgaagtatatttacggattaacttgctcaccggctttctatgatgagtttcataaaaaaccgtaccatcaactaaag |
231 |
Q |
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| T |
19607295 |
gcccaatctaaatcatgaggaactgaagtatatttacggattaacttgctcatcggcttcctatgatgagtttcataaaaaaccgtaccatcaactaaag |
19607196 |
T |
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| Q |
232 |
ccttctccaccaacggtcaagacacatgccacaccaccggttgcgccgcctcatctgatgacttcctcaatgacatcaccggttcgacac |
321 |
Q |
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| T |
19607195 |
ccctctccaccaacggtcaagccacatgccacaccaccggttgcgccgcctcatctgatgacttcctcaatgacatcaccggttccacac |
19607106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 19607038 - 19606917
Alignment:
| Q |
389 |
tacaaagacctgccccctcctgctcccttgtttcccccactcactcttttttctccctcaccttcttctcccattctctcggcaatcttttctccctcac |
488 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
19607038 |
tacagagacctgccccctcctgctcccttgtttcccccactcactcttttttctccctcacc---ttctcccattctctcgggaatcttttctccctcac |
19606942 |
T |
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| Q |
489 |
cagtcctaaaaatctcctccttcat |
513 |
Q |
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| T |
19606941 |
cagtcctaaaaatatcttccttcat |
19606917 |
T |
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