View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_24 (Length: 521)
Name: NF21120_low_24
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_24 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 46 - 508
Target Start/End: Complemental strand, 40464920 - 40464458
Alignment:
| Q |
46 |
attcgagattcaaacattcatttactacattgttaagtttagtttgtgtgcgacaatttattttagttacatttatttattgagtccactaccttcnnnn |
145 |
Q |
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||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40464920 |
attcgagattcaaacattcatttgttacattgtgaagtctagtttgtgtgcgacaatttattttagttacatttaattattgagtccactaccttcaaaa |
40464821 |
T |
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| Q |
146 |
nnnctcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctcactcacacgcgcaaaagctgtttataact |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40464820 |
aaactcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctccctcacacgcgcaaaagctgtttataact |
40464721 |
T |
|
| Q |
246 |
ttactattgtttcagtgataatttggtatatactatgctgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaa |
345 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464720 |
ttactattgtttcagtgataatttgttatatactatgctgcagcttactggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaa |
40464621 |
T |
|
| Q |
346 |
gctgaaatgtctagaaattctgatgcctttatagcattaccaggttggtacaaccttctttctagctccaatatttttctcatggatggtgtggaattta |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40464620 |
gctgaaatgtctagaaattctgatgcctttatagcattaccaggttggtacaaccttctttctagctcaaatatttttctcatggatggtgtggaattta |
40464521 |
T |
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| Q |
446 |
aattccaataggtgattcattaaggcacatgtcaaaagaattaccgatcgaactagcgagtct |
508 |
Q |
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| T |
40464520 |
aattccaataggtgattcattaaggcacatgtcaaaagaattaccggtcaaactagcgagtct |
40464458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 77694 - 77801
Alignment:
| Q |
284 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
383 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
77694 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
77793 |
T |
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| Q |
384 |
accaggtt |
391 |
Q |
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|||||||| |
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| T |
77794 |
accaggtt |
77801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 40888590 - 40888483
Alignment:
| Q |
284 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
383 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
40888590 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
40888491 |
T |
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| Q |
384 |
accaggtt |
391 |
Q |
| |
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|||||||| |
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| T |
40888490 |
accaggtt |
40888483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
301 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
394 |
Q |
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| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 28270827 - 28270720
Alignment:
| Q |
284 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
383 |
Q |
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||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || || |
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| T |
28270827 |
tgcagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgcctt |
28270728 |
T |
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| Q |
384 |
accaggtt |
391 |
Q |
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|||||||| |
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| T |
28270727 |
accaggtt |
28270720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
310 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
359 |
Q |
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||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
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| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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