View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_27 (Length: 504)
Name: NF21120_low_27
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 33221221 - 33221695
Alignment:
| Q |
17 |
aataaaaagatcttacattgctcccatcagataaagatcttacattgccactgagtaaacatggtcaacgaagttgcatttgcatcacaannnnnnnnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33221221 |
aataaaaagatcttacattgctcccatcagataaagatcttacattgccactgagtaaacatggtcaatgaagttgcatttgcatcacaatttttttttt |
33221320 |
T |
|
| Q |
117 |
nnnnnngtggacactaagttttatctatcaacaataaagatcggaaaagggattgaaaatgaaagaaaagaaacacaatacaatcgtaaaatgaaaggga |
216 |
Q |
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| T |
33221321 |
ttttt--ttgacactaagttttatctatcaccaataaagatcggaaaagggattgaaaatgaaagaaaagaaacacaatacaatcgtaaaatgaaaggga |
33221418 |
T |
|
| Q |
217 |
tgtgaattttatagacacactgcaatgttaccttgaatacccttatatggccccacttaagttgttgagagtgaaaacaaagatacactgacacgtacga |
316 |
Q |
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|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221419 |
tgtgaaatttatagacacactacaatgttacctcgaatacccttatatggccccacttaagttgttgagagtgaaaacaaagatacactgacacgtacga |
33221518 |
T |
|
| Q |
317 |
ggttttaaggacatcaatgtcttttccacttatttgagacacatgattcacgctactttcattcggcgagggttgtgttgtgtgtgaagtgaagaagtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221519 |
ggttttaaggacatcaatgtcttttccacttatttgagacacatgattcacgctactttcattcggcgagggttgtgttgtgtgtgaagtgaagaagtat |
33221618 |
T |
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| Q |
417 |
cttgtannnnnnnnctatcaattaattttgttgtgttttgcatctctgctggcttccatcttatatgtgttacctttg |
494 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33221619 |
cttgta-tttttttctatcaattgattttgttgtgttttgcatctctgctggtttccatcttatatgtgttacctttg |
33221695 |
T |
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