View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_28 (Length: 497)
Name: NF21120_low_28
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 9728096 - 9727631
Alignment:
| Q |
19 |
tggaagcagatggtaagtctttcgcaatagttgcttactaacgaatattttcctatttgattgcattcattgatgcaaattgcaaacatactagggaaaa |
118 |
Q |
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| T |
9728096 |
tggaagcagatggtaagtctttcgcaatagttgcttactaacgaatattttcctatttgattgcattcattaatgccaattgcaaacatactagtgaaaa |
9727997 |
T |
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| Q |
119 |
atgcatgatgaaataggtgttataaattttcatccaatgcttgttagagggaaacaaaataaacatacattttgtgtgttt-gagactttgaataaatgc |
217 |
Q |
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| T |
9727996 |
atgcatgatgaaataggtgttataaattttcatccaatgcttgttagagggaaacaaaataaacatacattttgtgtgttttgagactttgaataaatgc |
9727897 |
T |
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| Q |
218 |
ttgacacgcgagttgtgaaattgatttggttacaattgagttatttatgtttggatcgttttactctaaaaacaatgttgccagtgactttatttatcag |
317 |
Q |
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| T |
9727896 |
ttgacacgcgagttgtgaaattgatttggttacaattgagttatttatgtttggatcgttttactctaaaaacaatgttgccagtgactttatttatcag |
9727797 |
T |
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| Q |
318 |
tgactttagtttcttcttttgtcattggcatatcgttcagtatccagaacatttttatccttaaatatgtgctggaaatttagaatctgtcacaaatttt |
417 |
Q |
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| T |
9727796 |
tgactttagtttcttcttttgtcattggcatatcgttcagtatccagaacatttttatccttaaatatgtgttggaaatttagaatctgtcacaaatttt |
9727697 |
T |
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| Q |
418 |
ctatttcagttagtaaatcaaccttgtcttgcagggcaagaagggagtttggataaaattacctattcatct |
489 |
Q |
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| T |
9727696 |
cta------ttagtaaatcaaccttgtcttgcagggcaagaagggagtttggataaaattacctattcatct |
9727631 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 489
Target Start/End: Complemental strand, 56075259 - 56075203
Alignment:
| Q |
433 |
aatcaaccttgtcttgcagggcaagaagggagtttggataaaattacctattcatct |
489 |
Q |
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||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
56075259 |
aatcaacgttgtcttgtagggcaagaagggtgtttggataaaattacctattcatct |
56075203 |
T |
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