View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_30 (Length: 486)
Name: NF21120_low_30
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 785457 - 785730
Alignment:
| Q |
1 |
acaccgacacttgtgattacattaaattatgttannnnnnngaaaattttatccgtgtccgtgtcagtgtccgtgcttcataggtaaccactgttatttc |
100 |
Q |
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| T |
785457 |
acaccgacacttgtgattacattgaattatgtcattattttgaaaattttatcagtgtccgtgtctgtgtccgtgcttcataggtaaccactgttatttc |
785556 |
T |
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| Q |
101 |
aaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaattatcattttttgcttggttatgag |
200 |
Q |
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| T |
785557 |
aaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaattatcattttttgcttggttatgag |
785656 |
T |
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| Q |
201 |
atagaaactttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatccca |
274 |
Q |
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| T |
785657 |
atagaaactttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatccca |
785730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 339 - 476
Target Start/End: Original strand, 785795 - 785932
Alignment:
| Q |
339 |
atttgaaatccagcaaaactaagatgatgattgaagatggagggatatttgtgttactggttttgaaatttagtgctacgtaccacaacctttgaaccac |
438 |
Q |
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| T |
785795 |
atttgaaatccagcaaaactaagatgatgattgaagatggagggatatttgtgttactggttttgaaatttagtgctacgtaccacaacctttgaaccac |
785894 |
T |
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| Q |
439 |
tctcttcctttactacatttttctactcaatgcctttg |
476 |
Q |
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| T |
785895 |
tctcttcctttactacatttttctactcaatgcctttg |
785932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 407252 - 407190
Alignment:
| Q |
210 |
ttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcc |
272 |
Q |
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| T |
407252 |
ttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcc |
407190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11797630 - 11797661
Alignment:
| Q |
1 |
acaccgacacttgtgattacattaaattatgt |
32 |
Q |
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| T |
11797630 |
acaccgacacttgtgattacattaaattatgt |
11797661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 24343479 - 24343447
Alignment:
| Q |
55 |
gtgtccgtgtcagtgtccgtgcttcataggtaa |
87 |
Q |
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| T |
24343479 |
gtgtccgtgtctgtgtccgtgcttcataggtaa |
24343447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7888152 - 7888122
Alignment:
| Q |
1 |
acaccgacacttgtgattacattaaattatg |
31 |
Q |
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| T |
7888152 |
acaccgacacttgtgattacattaaattatg |
7888122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 23439974 - 23439942
Alignment:
| Q |
54 |
cgtgtccgtgtcagtgtccgtgcttcataggta |
86 |
Q |
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| T |
23439974 |
cgtgtccgtgtctgtgtccgtgcttcataggta |
23439942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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