View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_36 (Length: 446)
Name: NF21120_low_36
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 50573902 - 50574320
Alignment:
| Q |
18 |
aaattatagatccaggtttaattcttcttcttcagcacacacaagtcctattgatttctgtattttaacgcttttcctatgcattctaggtcctagagaa |
117 |
Q |
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| T |
50573902 |
aaattatagatccaggtttaattcttcttcttcagcacacacaagtcctattgatttctgtattttaacgcttttcctatgcattctaggccctagagaa |
50574001 |
T |
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| Q |
118 |
aaaggcacaagctggaaaatgggctgaacctcacgtggaaacaattaaaaccgtaagtctatcatttatatctttcatacttttgatctttaggttactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50574002 |
aaaggcacaagctggaaaatgggctgaacctcacgtggaaacaattaaaaccgtaagtctatcatttatatctttcatacttttgatctttaggttactg |
50574101 |
T |
|
| Q |
218 |
caattactgtgccctgtggttagatggtggatttgcttcatccacaatttgtttgttttacctgtggtcctgatagcttgttgaccatttaggagtttca |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50574102 |
caattactgtgccctgtggttagatgttggatttgcttcatccacaatttgtttgttttacccgtggtcctgatagcttgttgaccatttaggagtttca |
50574201 |
T |
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| Q |
318 |
acattggcagaaagctcccagtgtgttaaatacttgggcaaattaagttattatttctcactcttccctgttttcaactgaagaaatgggttccagccgt |
417 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50574202 |
acattggcagaaagctcctagtgtgttaaatacttgggcaaattaagttattatttctcactcttccctgttttcaactgaagaaatgggttccagccgt |
50574301 |
T |
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| Q |
418 |
gaaagaacagtggtctgtg |
436 |
Q |
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||||||||||||||||||| |
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| T |
50574302 |
gaaagaacagtggtctgtg |
50574320 |
T |
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