View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_low_38 (Length: 427)
Name: NF21120_low_38
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_38 |
 | |
|
| [»] scaffold0368 (1 HSPs) |
| | |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 42837184 - 42837582
Alignment:
| Q |
11 |
cacagagaaagaaacgaaatacaacaacgaacgatgnnnnnnngaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42837184 |
cacagagaaagaaacgaaatacaacaactaacaatgaaaaaaagaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatca |
42837283 |
T |
|
| Q |
111 |
aaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaatcggtgggagaaagtgagttaccggtga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42837284 |
aaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaattcacacaatcaatatgaacatgaatcggtgggagaaagtgagttaccggcga |
42837383 |
T |
|
| Q |
211 |
cagttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatcatcgaaatcgattttccggcgagatgtgagaagaata |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
42837384 |
cacttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatcagagaaattgattttccggtgagatgtgagaagaata |
42837483 |
T |
|
| Q |
311 |
accaagtgtgttgtcttaggtcctcgttatgaatgtcgagactcagaaccatggatctgccgccgagttcagcgccgctggagttgaaaagggaagaag |
409 |
Q |
| |
|
||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42837484 |
accctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccgccgagttcagcgccgctggagttgaaaagggaagaag |
42837582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 35598750 - 35598628
Alignment:
| Q |
19 |
aagaaacgaaatacaacaacgaacgatgnnnnnnngaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
35598750 |
aagaaacgaaatacaacaactaacaatgaaaaaaagaacaaaaactaatctaacaatgaagaaaaagctatatttcacacaatcacatatcaaaatcaac |
35598651 |
T |
|
| Q |
119 |
gattttcaaaccctaatgtcaaa |
141 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
35598650 |
aattttcaaaccctattgtcaaa |
35598628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 35599305 - 35599177
Alignment:
| Q |
54 |
gaacaaaaactattctaacaatgaagaaaaagt-tataattcacacaatcacatatcaaaatcaacgattttcaaaccctaatgtcaa--attcgaaatt |
150 |
Q |
| |
|
|||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
35599305 |
gaacaaaaactaatctaacaatagaaaaaaagactataattcacacaatcacatatcaaaatcaacgattttcaaaccctattgtcaaggattcaaaatt |
35599206 |
T |
|
| Q |
151 |
agaaaaatttacacaatcaatatgaacat |
179 |
Q |
| |
|
| ||||| ||||||||||||||||||| |
|
|
| T |
35599205 |
atcaaaatgcacacaatcaatatgaacat |
35599177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 13569 - 13225
Alignment:
| Q |
64 |
tattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaacgattttcaaaccctaatgtcaaattcgaaattagaaaaatttaca |
163 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
13569 |
tattctaacaatgaagaaaaaagtataattcacacaatcacatatcaaaatcaacgattt-caaaccctaatgtcaaattggaaattagaaaaattcaca |
13471 |
T |
|
| Q |
164 |
caatcaatatgaacatgaatcggtgggagaaagtgagttaccggtgacagttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13470 |
caatcaatatgaacatgaatcggtgggagaaagtgagttaccggcgacacttacgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatg |
13371 |
T |
|
| Q |
264 |
tgcgtggatcatcgaaatcgattttccggcgagatgtgagaagaataaccaagtgtgttgtcttaggtcctcgttatgaatgtcgagactcagaaccatg |
363 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13370 |
tgcgtggatcagagaaattgattttccggtgagatgtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatg |
13271 |
T |
|
| Q |
364 |
gatctgccgccgagttcagcgccgctggagttgaaaagggaagaag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13270 |
gatctgccgccgagttcagcgccgctggagttgaaaagggaagaag |
13225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 7390428 - 7390270
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaa-------tcggtgggagaaagtgagttaccggtgacagtt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
7390428 |
ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt |
7390329 |
T |
|
| Q |
216 |
acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7390328 |
acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca |
7390270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 19586684 - 19586842
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaaca-------tgaatcggtgggagaaagtgagttaccggtgacagtt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
19586684 |
ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt |
19586783 |
T |
|
| Q |
216 |
acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19586784 |
acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca |
19586842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 19586484 - 19586544
Alignment:
| Q |
58 |
aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19586484 |
aaaaactattctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaac |
19586544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 7390628 - 7390568
Alignment:
| Q |
58 |
aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7390628 |
aaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac |
7390568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 7390551 - 7390508
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa |
166 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7390551 |
ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa |
7390508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 19586561 - 19586604
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa |
166 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19586561 |
ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa |
19586604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 11658538 - 11658696
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaaca-------tgaatcggtgggagaaagtgagttaccggtgacagtt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |
|
|
| T |
11658538 |
ttcaaaccctaatgtcaaattcaaaattagcaaaattcacacaatcaatatgaacatgaaacatgaatcggtaggagaaagtgagttaccggtgacaatt |
11658637 |
T |
|
| Q |
216 |
acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11658638 |
acgaaggtcatttgttgttgcggcggcatttgcggagtcggcgagatgtgcgtggatca |
11658696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 50234464 - 50234528
Alignment:
| Q |
54 |
gaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50234464 |
gaacaaaaactattctaacaatgaagaaaaagttgtaattcacacaatcacatatcaaaatcaac |
50234528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 11658215 - 11658275
Alignment:
| Q |
58 |
aaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
11658215 |
aaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac |
11658275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 11658292 - 11658335
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa |
166 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11658292 |
ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa |
11658335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 11658383 - 11658426
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaa |
166 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11658383 |
ttcacaccctaatgtcaaattcaaaattagcaaaatttacacaa |
11658426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 50234545 - 50234582
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaattt |
160 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
50234545 |
ttcataccctaatgtcaaattcgaaattagcaaaattt |
50234582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 51655566 - 51655408
Alignment:
| Q |
123 |
ttcaaaccctaatgtcaaattcgaaattagaaaaatttacacaatcaatatgaacatgaa-------tcggtgggagaaagtgagttaccggtgacagtt |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
51655566 |
ttcaaaccctaatgtcaaattcaaaattagcaaaattcacactatcaatatgaacatgaaacatgaatcggtgggagaaagtgagttaccggtgacaatt |
51655467 |
T |
|
| Q |
216 |
acgaaggtcatttgttgttgtggcggcagttgcggagtcggcgagatgtgcgtggatca |
274 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
51655466 |
acgaaggtcatttgttgttccggcggaaattgcggagtcggcgagatgtgcgtggatca |
51655408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 151 - 87
Alignment:
| Q |
54 |
gaacaaaaactattctaacaatgaagaaaaagttataattcacacaatcacatatcaaaatcaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
151 |
gaacaaaaactattctaacaatgaagaaaaagctgtaattcacacaatcacatatcaaaatcaac |
87 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University