View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_4 (Length: 799)
Name: NF21120_low_4
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 417 - 789
Target Start/End: Complemental strand, 6003740 - 6003367
Alignment:
| Q |
417 |
attgttttatttatataaaaagacctcccatgctagtnnnnnnnnnnnctttaaagtctctctcttcaaacaaaaatgtttatttcaaatttcctttaga |
516 |
Q |
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| T |
6003740 |
attgttttatttatataaaaagacctcccatgctagtaaaaaaaaatactttaaagtctctctcttcaaacaaaaatgtttatttcaaatttcctttaga |
6003641 |
T |
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| Q |
517 |
ccccacccactcttgaagagccgtcaatgtgcggtttccaaatagatctctaatgttatattttcttacgttgtagttcatttatttggttatggagtac |
616 |
Q |
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| T |
6003640 |
ccccacccactcttgaagagccgtcaatgtgcggtttccaaatagatctctaatgttatattttcttacgttgtaattcatttatttggttatggagtac |
6003541 |
T |
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| Q |
617 |
acttcttaatctcttatcttcaaaatgagaaatagaaatgtagaaaatgaatttgagtggtgaaagtggtgagcctatcc-accaaataatggatccatg |
715 |
Q |
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| T |
6003540 |
acttcttaatctcttatcttcaaaatgagaaatagaaatgtagaaaatgaatttgagtggtgaaagtggtgagcctatccaaccaaataatggatccatg |
6003441 |
T |
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| Q |
716 |
attaagatgtcgaccttaaccatgcttacaaaattccttcatgcatggaccaccgtaatatccacgtgtctgtg |
789 |
Q |
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| T |
6003440 |
attaagatgtcgaccttaaccatgcttacaaaattccttcatgcatggaccaccataatatccacgtgtctgtg |
6003367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 6004120 - 6003756
Alignment:
| Q |
17 |
aacaagcgaatatgtagtcgtatattggtggggtggccacaagtttagttagctctcttatattttaagtgatattatgctaatattaactaatgaaacg |
116 |
Q |
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| T |
6004120 |
aacaagcgaatatgtagtcatatacgggtgggatggccacaagtttagttagctctcttatattttaagtgatattatgctaatattaactaatgaaacg |
6004021 |
T |
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| Q |
117 |
acctaataaggnnnnnnnntacaaaccaatatatacccttgctatctaagggtgtatataaagnnnnnnngtgattaactgtattttgactgttttacac |
216 |
Q |
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| T |
6004020 |
acctaataagaaaaaaaaatacaaaccaatatatacccttactatctaagggtgtatataaagaaaaaa-gtgattaactgtattttgacttttttaaac |
6003922 |
T |
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| Q |
217 |
aatcaaaatttaatagaaaacagtgtttaaaagattaaattttagagtgaaaatctcacgtagatagtttggttaatgagttaaacaatactgaatgata |
316 |
Q |
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| T |
6003921 |
aatcaaaatttaaaggaaaataatgtttaaaagattaaactttagagtaaaaatctcacgtagataatttggttaatgagttaaacaacattgaatgata |
6003822 |
T |
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| Q |
317 |
tttagtaaaatccaaaattcgatctttggaaactatcattcccactaacaactaacattcacttat |
382 |
Q |
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| T |
6003821 |
tttagtaaaattcaagatttgatctttggaaactatcattcccactaacaactaacattcacttat |
6003756 |
T |
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