View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_41 (Length: 403)
Name: NF21120_low_41
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 43016326 - 43016710
Alignment:
| Q |
7 |
gttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatgaatgccattacgtatgaactttgaagtaatcctat |
106 |
Q |
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| T |
43016326 |
gttactgaaaatagtttgtatatagcattaccgtaatgctatatctatgaggtgtacaacatatgaatgccattacgtatgaactttgaagtaatcctat |
43016425 |
T |
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| Q |
107 |
gttgtaacttattgacttttcaatcaaaatgtcatgatcataatcatatattcaacacgtttagagaaataagtggaattaatatgtttattttttctct |
206 |
Q |
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| T |
43016426 |
gttgtaacttattgacttttcaatcaaaatgtcatgatcataatcatatattcaacacgtttagagaaataagtggaattaatatgtttattttttctct |
43016525 |
T |
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| Q |
207 |
tattttcgatgttgtatatagatgtaaaccgtattttcatgaaaacaaaagtaggaaaactaaactaaatatctcaacacactctgccacgcttcggcta |
306 |
Q |
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| T |
43016526 |
tattttcgatgctgtatatagatgtaaaccgtattttcatgaaaacaaaagtaggcaaactaaactaaatatctccacacactctgtcacgcttgggcta |
43016625 |
T |
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| Q |
307 |
aaata-----actannnnnnnaaaatcattattatagataatctgtttttgttatcttgaaacagccatatgtgtgccacatttt |
386 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016626 |
aaataacgttactatttttttaaaatcattattatagataatctgtttttgttatcttgaaacagccatatgtgtgccacatttt |
43016710 |
T |
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