View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_43 (Length: 397)
Name: NF21120_low_43
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 40 - 385
Target Start/End: Complemental strand, 985688 - 985343
Alignment:
| Q |
40 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
139 |
Q |
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| T |
985688 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
985589 |
T |
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| Q |
140 |
gnnnnnnnagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttcccctcttatcacctcccattt |
239 |
Q |
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| T |
985588 |
gttttgttagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttaccctcttatcacctcccattt |
985489 |
T |
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| Q |
240 |
cctcaaaacttgtttgctttagtgctcacaacaatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
339 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
985488 |
cctcaaaacttgtatgctttagtgctcacaaccatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
985389 |
T |
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| Q |
340 |
tcattttatattatacactagattttgaaattatggttgcactcac |
385 |
Q |
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| T |
985388 |
tcattttatattatacactagattttgaaattatggttgcactcac |
985343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 985737 - 985692
Alignment:
| Q |
19 |
tgcattacatatcaggcaacttaatttagttgtacaaatgtagttg |
64 |
Q |
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| T |
985737 |
tgcattacatatcaggcaacttaatttagttgtacaaatgtagttg |
985692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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