View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_44 (Length: 393)
Name: NF21120_low_44
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 4554597 - 4554238
Alignment:
| Q |
15 |
caaaggcaggctgctttttaatgtcaatgcaatctataatatctccatcttcactctacaagcatgnnnnnnnttataattaagcttagcaccttgtgtg |
114 |
Q |
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| T |
4554597 |
caaaggcaggctgttttttaatgtcaatgcaatctataatatctccatcttcactctacaagcatgaaaaaaattataattaagcttagcaccttgtgtg |
4554498 |
T |
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| Q |
115 |
acaatttagaaaatgtaaacaatatcaaatctcacacaacattcaacagtgtaagatattgtctagtataccaaagaaaactttttaccttaatggtttt |
214 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554497 |
acaatttagaaaatctaaacaatatcaaatctaacacaacattcaacagtgtaagatattgtctagtataccaaagaaaactttttaccttaatggtttt |
4554398 |
T |
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| Q |
215 |
taacgagtgttttctaagatggtgtaattttttctcaacttccaaaaccttctgtcttgagaacgagtcatcattgttagtaccataaactgtaatgcaa |
314 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554397 |
taatgagtgttttctaagatgctgtaattttttctcaacttccaaaaccttctgtcttgagaacgagtcatcattgttagtaccataaactgtaatgcaa |
4554298 |
T |
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| Q |
315 |
agcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554297 |
agcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggt |
4554238 |
T |
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